| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 97.1% | 129.4 / ‑2.8 | 35 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (20/14); total (21/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGC > REL606/3875550‑3875694 | aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 1:366780/76‑1 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGGATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t < 2:1200637/76‑1 (MQ=255) gCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tt < 2:738893/76‑1 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tttttt < 2:398918/76‑1 (MQ=255) attTAACATACGCGTCCTGACTGTAATTTTAGAACGAATTTAAAACGCTTCACCTTGAAAAAACTACA‑t‑ttttttt > 2:337239/1‑75 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑ttttttt > 2:602393/1‑75 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tttttttc < 1:684132/76‑3 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTg < 1:1374473/76‑1 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGaa > 1:752611/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACNGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAANTgg > 2:1303468/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGAc > 1:1135375/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGAc > 1:279391/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACag < 1:891578/76‑1 (MQ=255) aCNGTAATTTGAGAACGAATTTAAAGCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGATagag < 2:1321627/76‑1 (MQ=255) cTGTAATTTGAGAANGAATTTAAACCGCATCACCNTGAAACAANTACATT‑TTTTTTCATCGTGGAATGGACAGAgg < 2:1162491/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGa < 1:369936/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGa > 1:1114915/1‑76 (MQ=255) aTTTGAGAACGAATTGAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATaaa < 2:47055/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:1119111/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAtt > 2:159778/1‑76 (MQ=255) gagaACGAGTGTAAACNGATTCACCTTGAAGANACTACA‑TATTTTTTCATCGTGAAATGGACAGANGATAACntnt > 1:104384/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 1:1100825/1‑76 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa > 2:382144/1‑76 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 1:799771/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAACAAACTCCATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAAt > 2:1130445/1‑76 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 2:1114915/76‑1 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 2:417394/1‑76 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 2:482883/1‑76 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATTGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 2:1354022/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:938936/1‑76 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt < 1:894489/76‑1 (MQ=255) aCCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 1:1139284/76‑1 (MQ=255) gCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc < 1:1366689/76‑1 (MQ=255) cTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc < 1:403445/76‑1 (MQ=255) ttCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:66350/1‑76 (MQ=255) ccTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 1:1019495/1‑76 (MQ=255) cTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGANTATCCCCGCTGa < 1:19313/76‑1 (MQ=255) tGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:1170648/1‑76 (MQ=255) aaaaaCTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:779654/1‑76 (MQ=255) aaaCTACATT‑TTTTTTCATCGTGAAATGGACANAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGANAgc > 2:1300075/1‑76 (MQ=255) aaCTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 1:625796/1‑76 (MQ=255) aaCTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 1:104845/76‑1 (MQ=255) aCTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcgc > 1:985027/1‑76 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGC > REL606/3875550‑3875694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |