| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 49 (1.150) | 39/144 | 0.1 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 31 (0.730) | 26/144 | 0.7 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
ATTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 | aTTTTGATNCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATa < 1:1228494/76‑1 (MQ=255) ttttGATTCATCGTGATGCCCGGTTTAC‑‑CCCCGCTGGCGGGGGGAACACCCTGAACGGTGGGGAAAAACCCCATaa < 1:692484/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 1:479417/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 1:204067/76‑1 (MQ=255) ttGATTCATCGTGATGACCGGTTTATCCCCCCCCGGGGGGGGGGGACCCCCAAACGGGGGGGGAAAAACCCCaaca > 1:911064/1‑73 (MQ=255) ttGATTCANCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGAGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgc < 1:1236120/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 2:845439/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACACCATAAGCGCTa > 2:29243/1‑76 (MQ=255) tCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 2:573396/76‑1 (MQ=255) tCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 1:910676/76‑1 (MQ=255) tCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:447199/76‑1 (MQ=255) cGTGATGTCCGGTTTAT‑‑CCCAGNNGGCGCGGGGANNGCCCTGAAGGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:1258710/76‑1 (MQ=37) cGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa > 2:1350170/1‑76 (MQ=255) gTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGGGGGGGAAAACCCCATAAGCGCTAACTTaa > 2:471378/1‑76 (MQ=255) gTGATGACCGGTTTAT‑‑CCCCACTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTaa > 2:798048/1‑76 (MQ=255) gTGAGGTCCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGTGGAAAAACCCCATAAGCGCTAACTTaa < 1:1379863/76‑1 (MQ=37) ggTTTCC‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:147157/76‑1 (MQ=255) ggTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGNACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTNTgg > 2:1305090/1‑76 (MQ=255) ggTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTgg > 2:113797/1‑76 (MQ=255) ttAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 2:1364285/1‑76 (MQ=255) tAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 1:388249/1‑76 (MQ=255) tAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:983186/76‑1 (MQ=255) ccccGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTGGTGGCATTNCg > 2:1317469/1‑76 (MQ=255) cgcgggcgcgggGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:648883/76‑1 (MQ=255) cGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 2:1373136/76‑1 (MQ=255) tGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCACATAAGCGCTAACTTAAGGGTTGTGGTATTNCGCCTGat > 1:1226880/1‑76 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt < 2:277398/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 2:632951/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa > 2:79317/1‑76 (MQ=255) gAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:963608/76‑1 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:734711/76‑1 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:1242791/76‑1 (MQ=255) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 2:677364/76‑1 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 2:677370/76‑1 (MQ=31) | ATTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |