| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893612–3894994 | 3901930 | 6937–8319 | 17 [14] | [0] 39 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 36 (0.840) | 32/146 | 0.4 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
TTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901857‑3902005 | ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacagg > 1:643753‑M2/75‑76 (MQ=255) actccaattgaatatcgaaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTg < 1:219164‑M2/5‑1 (MQ=255) ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGccc < 2:564336‑M2/8‑1 (MQ=255) caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCa < 1:919793‑M2/9‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAg > 2:1119948‑M2/67‑76 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAg < 1:1022091‑M2/10‑1 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGa < 2:999160‑M2/14‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAc > 2:1007635‑M2/62‑76 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAc < 1:1288783‑M2/15‑1 (MQ=255) tcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGc < 1:557880‑M2/19‑1 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCGCAGGTGACCAGCa > 1:793777‑M2/57‑76 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCa > 1:501849‑M2/57‑76 (MQ=255) ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAc < 1:249637‑M2/21‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGa > 1:293227‑M2/46‑76 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGaa > 1:240504‑M2/45‑76 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGaa > 1:936470‑M2/45‑76 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc < 1:541802‑M2/33‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACg < 2:328397‑M2/34‑1 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACggg > 2:387036‑M2/41‑76 (MQ=255) tcgtntttaactgtccaacttttgggggtcactacaGGTNGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCt < 1:176222‑M2/40‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaaa > 2:494061‑M2/33‑76 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaaa < 1:942883‑M2/44‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaaa > 1:993774‑M2/33‑76 (MQ=255) tttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt < 2:434375‑M2/45‑1 (MQ=255) taactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTg > 2:348824‑M2/30‑76 (MQ=255) ctgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcc < 2:1047753‑M2/50‑1 (MQ=255) tgtccaactttttggggtcngtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACTGGGCCTAAAATTGGccc > 1:1300307‑M2/26‑76 (MQ=255) tccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCcca < 2:278583‑M2/53‑1 (MQ=255) ccaactttttggggtcagtacaGGTTGCCCCGGTGACCAGCACGCCGCCAAGAACGGGGCCTNAAATTGGCCccac > 2:1278198‑M2/23‑76 (MQ=255) ccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccac > 1:884802‑M2/23‑76 (MQ=255) caactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacc > 1:1240608‑M2/22‑76 (MQ=255) tttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAc > 2:1122472‑M2/18‑76 (MQ=255) tttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAccc < 1:1079429‑M2/61‑1 (MQ=255) ttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCg > 1:836650‑M2/15‑76 (MQ=255) tcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATgg < 2:1043449‑M2/68‑1 (MQ=255) tcagtacaAGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAGCCGGCATgg > 1:50178‑M2/9‑76 (MQ=255) caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaa > 1:1187885‑M2/3‑76 (MQ=255) aGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCTCCAGACGCGGCATGGCGACaaa > 2:52941‑M2/2‑76 (MQ=255) aGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaa < 1:1108311‑M2/75‑1 (MQ=255) | TTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901857‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |