| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893610–3894994 | 3901930 | 6937–8321 | 12 [11] | [0] 50 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 49 (1.240) | 35/146 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
ATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > REL606/3901856‑3902004 | tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacag < 2:987603‑M2/1‑1 (MQ=255)tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacag > 1:782092‑M2/76‑76 (MQ=255)tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacag < 1:483388‑M2/1‑1 (MQ=255)tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacag < 1:483402‑M2/1‑1 (MQ=255)tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacag > 1:607403‑M2/76‑76 (MQ=255) ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacagg < 2:647233‑M2/2‑1 (MQ=255) ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacagg < 2:607403‑M2/2‑1 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGt < 1:1020326‑M2/3‑1 (MQ=255) gactccaattgaatgtcggaatcagacctatatgcctcgtgtttaactgtccagctttatggggtcagtacaGGtt < 2:189456‑M2/4‑1 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt < 2:429868‑M2/4‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTg < 2:321107‑M2/5‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTg < 1:692323‑M2/5‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAg > 1:759125‑M2/67‑76 (MQ=255) ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGt < 1:758019‑M2/12‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTg > 2:1156218‑M2/64‑76 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGa < 1:745344‑M2/14‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAc > 1:1065505‑M2/62‑76 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAcc > 2:158469‑M2/61‑76 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCa < 2:93090‑M2/17‑1 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAg > 1:360345‑M2/59‑76 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAg > 2:811345‑M2/59‑76 (MQ=255) tcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCGCAGGTGACCAGc < 1:771839‑M2/19‑1 (MQ=255) ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtaagtacaGGTTGCCCAGGTGACCAGCAc > 2:394520‑M2/56‑76 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcg > 1:1161415‑M2/55‑76 (MQ=255) aatcattcctatatgcctcgtgtttaactgtccaactttttgtggtcagtacaGGTTGCCCAGGTGACCAGCAcgc > 2:980897‑M2/54‑76 (MQ=255) aatcagacctatatgcctcgtgtttaactgtcnaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCNcgc > 2:1216171‑M2/54‑76 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAg < 2:33926‑M2/30‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCATGTGACCCGCACGCCGCCAAGaa > 2:39641‑M2/45‑76 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGaa > 2:688178‑M2/45‑76 (MQ=255) atgcctcgtgtttaactggccgactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACgg < 1:1220535‑M2/35‑1 (MQ=255) tcgtgtttaactgtccaactttttgggttcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCt < 2:966752‑M2/40‑1 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCt < 1:575138‑M2/40‑1 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTa > 2:117327‑M2/36‑76 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaa > 1:598071‑M2/35‑76 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaaa > 1:664086‑M2/33‑76 (MQ=255) tttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt > 1:803430‑M2/32‑76 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc > 2:344297‑M2/25‑76 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc > 2:873564‑M2/25‑76 (MQ=255) tccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCcca < 2:467561‑M2/53‑1 (MQ=255) tccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCcca < 2:738206‑M2/53‑1 (MQ=255) actttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAg < 1:146778‑M2/57‑1 (MQ=255) tttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAc > 1:729661‑M2/18‑76 (MQ=255) ttgnggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAANAACGGGGCCTAAAATTGGCCCCACCAGACCCg < 2:1212965‑M2/62‑1 (MQ=255) ggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGc < 1:658718‑M2/64‑1 (MQ=255) cagtacaGGTTGCCCAGGTGACCNGCACGNCGCCAGGAACGGGGNCTAAAACTGGCCCCACGAGACCCGGCATGGc > 2:168340‑M2/8‑76 (MQ=255) agtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg < 1:266962‑M2/70‑1 (MQ=255) tacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAc < 1:301043‑M2/72‑1 (MQ=255) acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa > 1:1026777‑M2/4‑76 (MQ=255) acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa < 2:295472‑M2/73‑1 (MQ=255) caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaa < 1:344297‑M2/74‑1 (MQ=255) | ATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > REL606/3901856‑3902004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |