| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 92.9% | 147.2 / 4.4 | 42 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (25/14); total (26/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGC > REL606/3875550‑3875692 | aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa < 1:726933/76‑1 (MQ=255) tAGCATTATTCAACGTACGCGGCCTGACTGTAATTTGAGAACGAATTTAAACCACTTCTCCTTGAAAAAACTACA‑‑t < 2:228290/76‑1 (MQ=255) aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tt < 1:687967/76‑1 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCg > 1:1149183/1‑76 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGa > 1:1077179/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGaa < 1:296354/76‑1 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGaaa > 2:1415110/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTT‑TAT‑TTCATCGTGaaa < 1:107752/76‑1 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTAATCGTGAAAt > 2:189363/1‑76 (MQ=255) cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACa < 2:1489044/76‑1 (MQ=255) cTGACAGAAATTTGAAAAAAAATTAAAACCGCATCACCATAAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACa < 2:573877/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACag < 2:1077925/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACag < 2:1342386/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACaga > 2:494512/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACATATAAAAAACTANAT‑TTT‑T‑T‑TTCATCGTGAAATGGACagag > 1:139740/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGAt < 1:1299713/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATaaa < 1:343971/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAAtt > 2:1416736/1‑76 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAAtt > 2:1416711/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGt > 1:1255996/1‑76 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGtt > 1:852426/1‑76 (MQ=255) gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTc > 1:786347/1‑76 (MQ=255) aaCGAATTTAAACNGCTTCACCTTGAAAAATCTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 2:1404489/76‑1 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:656248/76‑1 (MQ=255) aaTTTAGACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 1:1400138/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:1341294/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:524849/1‑76 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 1:1262400/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAGACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAGTTGTTCAATAACgg > 2:239182/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 1:1498203/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:808699/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:898322/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:898339/1‑76 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt > 2:493453/1‑76 (MQ=255) ccGCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:1088989/76‑1 (MQ=255) gCTTCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcc > 1:211636/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACA‑‑TTTAT‑T‑TACANCGTGAAATAGACAGNGGATANATTGTTCAATAACCGATTATccc < 2:206217/76‑1 (MQ=255) ttCACCTTGAAAAAACTACA‑‑TTT‑T‑TCTTCATCGTGAAATGNNCAGAGGATAANNTATTCAATAACGGATTATcccc > 1:1383301/1‑76 (MQ=255) tCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:955084/1‑76 (MQ=255) tCACCTTGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:710650/1‑76 (MQ=255) aCCTTGAAAAAACTACATTTTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 1:1264927/1‑76 (MQ=255) ttGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc < 2:1149183/76‑1 (MQ=255) ttGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 1:1334784/1‑76 (MQ=255) tGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:840533/1‑76 (MQ=255) tGAAAAAACTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg < 1:1180432/76‑1 (MQ=255) aaaCTACAT‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:1014679/1‑76 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTT‑T‑T‑TTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGC > REL606/3875550‑3875692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |