| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 95.0% | 142.1 / 1.0 | 41 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base T (16/22); total (19/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.79e-01 | |||||||||||
AGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875552‑3875695 | aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑t > 2:128346/1‑76 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tttt > 1:795037/1‑76 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑tttttt > 1:710433/1‑76 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑ttttttt < 2:542858/76‑2 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGt > 1:80506/1‑76 (MQ=255) tACGCGTCCTGAATGTAATTTGAGAACGAATTNAAACCGCTNCACCTTGAAAAAACTACA‑TNTTTTTTCATCGTGa > 2:962124/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGaa > 1:682587/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATgg > 2:140873/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGAc > 2:630376/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGAc < 1:585352/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGAc < 1:574023/76‑1 (MQ=255) cTGACTGTAATTAGAGAACGAATTTAAACCGCNTCGCCTTGNAAAAACTACATT‑TTTTTTCNTCGTGAAATGGACa > 2:966348/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACag < 1:457254/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACag < 2:757687/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACaga > 2:607255/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACagag < 2:420303/76‑1 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAgg < 1:834719/76‑1 (MQ=255) cTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAgg > 1:463317/1‑76 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGa < 2:709889/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGAt > 1:194466/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGTAATGGACAGAGGATa < 1:1042243/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATaa > 2:451680/1‑76 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAt < 1:630376/76‑1 (MQ=255) ctaagaACGAATTNAAACCGCTTCTCCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 1:155364/73‑1 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGtt > 2:648760/1‑76 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 2:636112/76‑1 (MQ=255) aaCGAATTTAAACCGCTGCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGATAGAGGATAAATTGTTCa < 1:128346/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:272371/76‑1 (MQ=255) gAATTTAAACCGCNTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 2:1063399/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:279388/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 2:256087/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt > 1:980368/1‑76 (MQ=255) cTTCACCTNGAAAAAACTACATT‑TTTTTTCATCGTGAAAAGGACAGAGGATAAATTGTTCAATAACGGATTATccc < 1:1019212/76‑1 (MQ=255) ttCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:228735/76‑1 (MQ=255) ttCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:832528/1‑76 (MQ=255) ttCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc < 1:537652/76‑1 (MQ=255) tCACCTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:111114/1‑76 (MQ=255) cTTGAAAAAACTACATT‑TTTTTTCATCGTGAGATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:194659/76‑1 (MQ=255) cTTGAAAAAACTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:514657/1‑76 (MQ=255) ttGAAAACACTACATT‑TTTTTTCATCGTGTAATGGACAGAGGATAAATTGTTTAATAATGGATTATCCCCGCTGAc < 1:57540/76‑1 (MQ=255) ttGAAAAAACTACA‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:729957/1‑76 (MQ=255) aaaaatCTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaa > 2:76363/1‑76 (MQ=255) aaaaCTACACT‑TTTTTTCATCGTNAAATGNACAGAGGATAAATTNTTTAATCACGGATTATCCCCGCTGACGAAAg > 2:145169/1‑76 (MQ=255) aaaCTACATT‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 2:200319/76‑1 (MQ=255) cTACATT‑TTTTTTCATCGTGTAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:8587/1‑76 (MQ=255) | AGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875552‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |