| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 35 (0.990) | 30/144 | 0.2 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 43 (1.220) | 38/144 | 0.0 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
AATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772783‑2772924 | aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCAt < 2:1123470/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATaa < 1:696054/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAg < 2:1025267/76‑1 (MQ=255) tGATTCATCCTGATGACCGGTTTATCCCCGCTGCCGCGGGGGACACCCTGGAC‑GGGGGGGGAAAACCCCATAAgcg > 2:995190/1‑76 (MQ=25) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTa < 2:1042318/76‑1 (MQ=255) aTCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑t < 1:125395/76‑1 (MQ=255) cGTNATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGANC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTa < 2:1092931/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTa < 1:941927/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTaa < 1:194511/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAg < 1:518575/76‑1 (MQ=255) gatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAgg < 1:896072/76‑1 (MQ=255) tgaCCGGTTTATCCCCGCTGGGGCGGGGGAAAACCTGAACGGGGGGGGAAAAACCCCA‑AAACGCTCACTTTAAggg > 2:725918/1‑76 (MQ=12) gaCCAGTTTATCCCCGCCGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAACCCCCATAAGCGCTTAC‑TTAAGGNtt > 2:1102130/1‑76 (MQ=37) aCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTtg < 2:232913/76‑1 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGt < 2:570793/76‑1 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTa < 1:740226/76‑1 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTa > 2:472660/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTa > 1:565582/1‑76 (MQ=255) cTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGACTGa > 2:280048/1‑76 (MQ=255) gcgcGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGatat < 1:871072/76‑1 (MQ=255) gcggcgAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGa < 1:1142888/76‑1 (MQ=255) gggAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:989988/76‑1 (MQ=255) ggAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:741023/76‑1 (MQ=255) gAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTaa > 1:356043/1‑76 (MQ=255) gAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt > 1:448097/1‑76 (MQ=255) gAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 2:416002/76‑1 (MQ=255) aaC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 2:542648/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:473765/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:29521/1‑76 (MQ=40) aaaaCCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:772926/76‑1 (MQ=31) | AATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772783‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |