| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 4,202,085 | Δ2 bp | coding (474‑475/825 nt) | iclR ← | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,202,085 | 0 | A | . | 100.0% | 125.6 / NA | 26 | coding (475/825 nt) | iclR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (21/5); total (21/5) | |||||||||||
| * | REL606 | 4,202,086 | 0 | A | . | 100.0% | 125.6 / NA | 26 | coding (474/825 nt) | iclR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (21/5); total (21/5) | |||||||||||
TTTGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTACCT > REL606/4202017‑4202150 || tttGCGGTGCAGNAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCAt > 1:23657/1‑76 (MQ=255)tttGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCAt > 2:973656/1‑76 (MQ=255)tttGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCAt < 2:1241581/76‑1 (MQ=255) cGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGc < 2:731480/76‑1 (MQ=255) ggTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCa > 1:536193/1‑76 (MQ=255) gTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCaa < 2:1034728/76‑1 (MQ=255) tGCAGCAGCTTCGTCACCTGTTCTTCGCTCATTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAAt < 2:43643/76‑1 (MQ=255) tGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAAt < 2:665423/76‑1 (MQ=255) ttCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTAccgccg > 2:96559/1‑76 (MQ=255) cGTCCCCTGTTCTTCGCTCAGTTGGGAAAAAAAGGCTTTCCCTGC‑CCGG‑GGCGTGCATCGGCATTTTACCGCCGAt < 2:354510/76‑1 (MQ=255) gTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATa > 1:415583/1‑76 (MQ=255) tGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGcgcg > 2:321503/1‑76 (MQ=255) ttcttcGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGAAATTTACCGACGATAGGCGCGGa > 1:1235225/1‑76 (MQ=255) tcttcGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCTCCGATAGGCGCGGAc > 1:1176475/1‑76 (MQ=255) tcttcGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGAc > 2:332895/1‑76 (MQ=255) tCAGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCa > 1:1166497/1‑76 (MQ=255) tCAGTTGGGCAAAAAAGGCTTTCCCTGCCCCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCa < 2:1133830/76‑1 (MQ=255) cAGTTGGGCTAAAAAGGCTTTACCTGCNCCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCAt > 1:1431564/1‑76 (MQ=255) aGTTGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATc > 2:179846/1‑76 (MQ=255) tGGGCTAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGa > 1:750975/1‑76 (MQ=255) caaaaaaGGTTTTCCCTGCCCCGG‑‑GCGTGCATCGGCAATTTCCCGCCGATAGGCGCGGACATTCGCATCAGATGCg < 2:160546/74‑1 (MQ=255) cTAAAAAGGCTTTACCTGCAGCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCg > 2:504363/1‑76 (MQ=255) tAAAAAGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGt > 2:1143976/1‑76 (MQ=255) aaaGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTaca > 2:480336/1‑76 (MQ=255) aaGGCTTTACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTacac > 1:902940/1‑76 (MQ=255) tttACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTAc > 1:1288680/1‑76 (MQ=255) ttACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTANACTGTAcc > 1:1272572/1‑76 (MQ=255) ttACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTAcc > 1:1051171/1‑76 (MQ=255) tACCTGCACCGG‑‑GCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTACCt > 2:113875/1‑76 (MQ=255) || TTTGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAAGGCTTTACCTGCACCGGAAGCGTGCATCGGCAATTTACCGCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTACCT > REL606/4202017‑4202150 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |