| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 16 (0.560) | 14/144 | 1.0 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 22 (0.770) | 20/144 | 0.5 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
AGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCGAGAACTGCCTTAAACTCCATACCACGTT > REL606/2774124‑2774265 | aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGttt < 2:323707/76‑1 (MQ=34)aGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGttt < 2:216404/76‑1 (MQ=34) gCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTa < 1:726228/76‑1 (MQ=38) aTCGACTTAACNAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTAcc > 1:143543/1‑76 (MQ=255) gTCTTAACGAGGCACCGAGGCGTGGCATTCTTCAGATGGTTCAACCCTTAAGTTATCGCTTATGGGTTTTAccccc > 1:722659/1‑76 (MQ=255) gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTAccccc > 1:270916/1‑76 (MQ=255) aaCGAGGCACCGAGGCGTCGCATTTTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCgtg < 2:494901/76‑1 (MQ=255) aaCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCgtg > 1:445192/1‑76 (MQ=255) gAGGCACCGAGGCGTCGCATTCTTNAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCatggtg > 2:175254/1‑76 (MQ=255) aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGtggtgg > 2:943517/1‑76 (MQ=255) cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTActt < 2:215142/76‑1 (MQ=255) cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTActt > 1:685051/1‑76 (MQ=255) ggCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTActtctt < 2:233826/76‑1 (MQ=255) gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGATACTTCTTCGATTc > 1:419373/1‑76 (MQ=255) cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCg < 1:480813/76‑1 (MQ=255) ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTa < 2:943747/76‑1 (MQ=255) cttcAGATGGTTCAACCCTTAAGTGAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAg < 2:295905/76‑1 (MQ=255) cAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTCCCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCga > 1:639284/1‑76 (MQ=255) tCATCCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGCGGCTACNTCTTCGATTCGTAAGCGAGAACTccc < 2:836565/76‑1 (MQ=21) aaCCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCGAGAACTGCCta < 2:769084/76‑2 (MQ=255) ccTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCGAGAACTGCCTTaaa > 2:240573/1‑76 (MQ=255) ttAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCGAGAACTGCCTTAAACt > 2:959988/1‑76 (MQ=255) tAGCGCTTGTGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCNATTCGTAAGCGAGAACTGCCTTAAACTCCATAc > 1:779399/1‑76 (MQ=255) aGCGCTTATGGGTTTTACCCCCGCGTGGTNGCTACTTCTTCGATTNGTAAGCGAGAGCTGCCGTAAACTCGNTNcc < 2:816174/76‑1 (MQ=255) aGCGCTTATGGGTTTTACCCCCGCGTGGGGGCTACTTCTTCGGTTTGTAAGCGGGAACTGCCTTTAAATCCATAcc > 1:503779/1‑76 (MQ=25) gcgcTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCGAGAACTGCCTTAAACTCCATACCa < 1:288678/76‑1 (MQ=255) ttATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCGAGAACTGCCTTAAACTCCATACCACGtt > 2:67702/1‑76 (MQ=255) | AGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGTTTTACCCCCGCGTGGTGGCTACTTCTTCGATTCGTAAGCGAGAACTGCCTTAAACTCCATACCACGTT > REL606/2774124‑2774265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |