New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 1425702NA (NA)5 (0.180) 4/140 3.3 NA coding (162/267 nt) ynaE predicted DNA‑binding transcriptional regulator
?REL606 = 1425860 NA (NA)coding (4/267 nt) ynaE predicted DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

GGTGTCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGATATGCCA  >  REL606/1425813‑1425935
                                               |                                                                           
ggTGTCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAgg                                                 >  2:268853/1‑76 (MQ=31)
  tgtCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGat                                               <  1:201886/76‑1 (MQ=34)
    tCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGatat                                             <  2:327160/76‑1 (MQ=34)
     cTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATg                                            <  2:44870/76‑1 (MQ=34)
     cTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATg                                            <  1:796399/76‑1 (MQ=34)
        ttGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTg                                         >  2:318451/1‑76 (MQ=34)
         tGATTTCATGAAGATATTCCTTCAANTATTATGGATGTTCATTGCGAGATTGNATGTCTGATNCAGGATATNTTgn                                        >  1:828726/1‑75 (MQ=11)
             ttCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACtt                                     <  1:159101/75‑1 (MQ=34)
             ttCATGAAGATATTCCTTAAAATANTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACtt                                     >  2:159101/1‑75 (MQ=21)
             ttCATGAAGATATTCCTGAAGATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTta                                    <  2:135458/76‑1 (MQ=255)
             ttCATGAAGATATTCCTAAAGATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTta                                    <  2:135455/76‑1 (MQ=255)
               cATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTtata                                  <  1:222998/76‑1 (MQ=34)
               cATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTtata                                  <  2:541123/76‑1 (MQ=34)
               cATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTtata                                  >  1:915637/1‑76 (MQ=34)
                aTGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATAc                                 >  1:964736/1‑76 (MQ=34)
                       tatTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGtt                          >  1:581419/1‑76 (MQ=34)
                         ttCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGtttt                        <  2:538290/76‑1 (MQ=34)
                           gcTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGt                      >  2:744792/2‑76 (MQ=21)
                                aaaTATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTggg                 <  2:309515/76‑1 (MQ=34)
                                   tattatTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTa              <  2:533589/76‑1 (MQ=34)
                                    attattGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTAt             >  2:712399/1‑76 (MQ=34)
                                     ttattGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTAtt            <  2:655053/76‑1 (MQ=34)
                                        ttGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGa         >  2:917561/1‑76 (MQ=34)
                                        ttGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGa         >  2:123428/1‑76 (MQ=34)
                                        ttGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGa         <  1:585570/76‑1 (MQ=34)
                                         tGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGat        <  1:386252/76‑1 (MQ=34)
                                         tGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGat        <  1:300309/76‑1 (MQ=34)
                                          gATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGata       >  2:701018/1‑76 (MQ=34)
                                           aTTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGatat      >  2:419308/1‑76 (MQ=34)
                                           aTTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGatat      <  2:353020/76‑1 (MQ=34)
                                             tttCATTGCGATATTGTAAGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGATATGc    <  1:742052/76‑1 (MQ=21)
                                               tCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGATATGCCa  <  2:414940/76‑1 (MQ=34)
                                               tCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGATTTGTCTGGGTTATTGGATATGCCa  <  1:95213/76‑1 (MQ=255)
                                               tCACTGCGATATTGTATGTCTGATTAAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGATATGCCa  <  2:824559/76‑1 (MQ=255)
                                               |                                                                           
GGTGTCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACATCGGTTTTGTCTGGGTTATTGGATATGCCA  >  REL606/1425813‑1425935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.