| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 91.4% | 122.1 / 5.8 | 35 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base T (18/14); total (21/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01 | |||||||||||
ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875550‑3875693 | aTAGCATTGTTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:1053296/1‑76 (MQ=255)aTAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACa > 2:1053285/1‑76 (MQ=255) aGCATTATTCAACANACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑tn < 2:168154/76‑2 (MQ=255) tattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttt‑ttt‑t < 1:283793/76‑1 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGNATTTAAATCGATTCACCTTGAAAAAACTACA‑ttt‑ntt‑tt > 1:150216/1‑75 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttt‑ttt‑tt > 1:415235/1‑75 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑ttt‑ttt‑tt < 1:619736/76‑2 (MQ=255) aCATACGCGTCCTGACTGTAATTTCAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCg > 2:261329/1‑76 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGt < 2:448833/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTg > 2:539399/1‑76 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAAt < 2:982591/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATg < 1:1051083/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACag < 1:734548/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACaga < 1:383474/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCATCACCTTGAAAAAACTACATTTT‑TTT‑TCATCNTGAAATGGACaga > 2:1108503/1‑76 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACagag < 2:1065461/76‑1 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGa > 1:1013833/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATa > 2:889202/1‑76 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATaa > 2:518852/1‑76 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAAt < 2:112955/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAAtt > 1:875194/1‑76 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAAtt < 2:848090/76‑1 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTAGAAAAAACTACA‑TTTGNTT‑NCATCGTGAAATGGANAGAGGATAAATTg > 2:1091995/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATTGTGGAATGGACAGAGGGTAAATTGt > 1:786627/1‑76 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAANGGACAGAGGATAAATTGtt < 1:1130251/76‑1 (MQ=255) gaACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCa > 2:52781/1‑76 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCaa > 1:520160/1‑76 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCaa > 1:520166/1‑76 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACNTTTT‑TTT‑TCATCGTGAAATGGANAGAGGATATANTGTTCAAt > 2:1010495/1‑76 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:511546/76‑1 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:477019/1‑76 (MQ=255) aaaCGGCTTCACCTTGACAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACGGAGGATAAATTGTTCAATTACGNAt > 2:1141382/1‑76 (MQ=255) ccGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:495749/76‑1 (MQ=255) cGCTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATc > 2:1067795/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:950744/1‑76 (MQ=255) tCACCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg < 1:187662/76‑1 (MQ=255) aCCTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 2:380310/76‑1 (MQ=255) aCCTCGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt > 2:1193500/1‑76 (MQ=255) ccTTGAAAAAACTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg > 1:547603/1‑76 (MQ=255) tGAAAAAACTACA‑TTT‑TTTNTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACCGATTATCCCCGCTGACg > 1:1127589/1‑76 (MQ=255) aaaCTACATTTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc < 1:796997/76‑1 (MQ=255) aaCTACATTTT‑TTT‑TCATCGTGAAATGGACAGANGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg > 2:1022544/1‑76 (MQ=255) | ATAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑TTT‑TTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875550‑3875693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |