| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 96.9% | 111.7 / ‑2.1 | 32 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (16/15); total (17/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01 | |||||||||||
TTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875556‑3875695 | ttattCAACATACGCGTCCTGACTGTAATTTCAGAACGAANNTAAACCGCTTNNCCTTGAAAAAACTACA‑t‑ttttt > 1:1182521/1‑76 (MQ=255)ttattCAACATACGCGTCCTGACTGCAATTTTAGAACGATNNTAAACCGCTTNNCATTGAAAAAACTACA‑t‑ttttt > 1:1182512/1‑76 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑ttttt‑ttca > 1:641651/1‑73 (MQ=255) tCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑t‑ttttt‑ttca < 2:1170713/76‑4 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCg < 1:293429/76‑1 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGt > 2:1033941/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGaa < 1:451247/76‑1 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAAt < 1:102169/76‑1 (MQ=255) gTCCTGACTNTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATgg > 1:31073/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATgg > 1:1117396/1‑76 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACag < 1:430169/76‑1 (MQ=255) gACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACaga > 2:1297888/1‑76 (MQ=255) tGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGa > 1:867926/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGAt > 2:424121/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGAt < 2:642713/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATa > 1:986008/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATa > 1:985993/1‑76 (MQ=255) aaTTTGAGAACGGATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATaa < 1:393325/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATaa > 1:182350/1‑76 (MQ=255) ttGAGAACTAATTAAAACCACTTCCAGTAGAAAAAACTTCA‑T‑TTTTTATAAATATAAAATGGACAGAGGATAAAtt < 2:533938/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAAtt < 2:533930/76‑1 (MQ=255) tGAGAACGAATTTAAACAGCTNCACCTNGAAAAAACTACA‑TGTTTTT‑TNATCCTGAAATGAAACACGGATAAATTg > 1:1276731/1‑76 (MQ=255) aaCGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGNCAGAGGATAAATTGTTCa < 1:1250420/76‑1 (MQ=255) cGAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAAt < 1:734799/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGNAATGGACAGAGGATAAATTGTTCAATa < 1:1314166/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATa < 1:808118/76‑1 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:612524/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCNTGAAATGGACAGAGGATAAGTTGTTCAATAACg < 2:1112039/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTACA‑T‑TTTTTGTCATCGTGAAATGGACAGAGGATAAATTGTNCAATAACg > 1:1155796/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:866274/1‑76 (MQ=255) tCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:930813/1‑76 (MQ=255) tCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:465988/1‑76 (MQ=255) tCACCTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 2:744118/1‑76 (MQ=255) ccTTGAAAAAACTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTg < 1:290096/76‑1 (MQ=255) ttGAAAAAACTACATT‑TTTTT‑TCATCGTCAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGAc > 2:672611/1‑76 (MQ=255) aaaCTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:689666/1‑76 (MQ=255) aaCTACATT‑TTTTT‑TCATCGTGAGATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgcg < 1:1125060/76‑1 (MQ=255) cTACATT‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:189777/1‑76 (MQ=255) | TTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑T‑TTTTT‑TCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875556‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |