| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893624–3894994 | 3901930 | 6937–8307 | 12 [11] | [0] 45 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 42 (1.050) | 35/146 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGC > REL606/3652460‑3652608 | cTGACTCCAATTGAATATCGGAATCTGACCTGTATGCCTANNGTTTAACTGTNNACCTTTTTGGGGTCAGTACaaa > 1:1180252/1‑76 (MQ=11)cTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACaaa < 1:1141022/76‑1 (MQ=31)cTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACaaa > 1:972463/1‑76 (MQ=31)cTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACaaa > 1:853208/1‑76 (MQ=31)cTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACaaa > 1:899764/1‑76 (MQ=31)cTGACGCCNATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACaaa < 1:1161864/76‑1 (MQ=9) aCTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACtt > 1:957751/1‑76 (MQ=35) tCCAATTGAATATCNGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACtttn < 2:188627/76‑2 (MQ=38) tCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAATTTTTTGGGGTCGGTACAAACTTTg > 1:250815/1‑76 (MQ=255) tCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCGGTACAAACTTTg > 1:250807/1‑76 (MQ=255) tCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg > 1:644200/1‑76 (MQ=39) ccAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa > 2:19720/1‑76 (MQ=40) cAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt > 1:617111/1‑76 (MQ=255) aaTTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAtt > 1:1110228/1‑76 (MQ=255) aaTTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAtt > 1:311387/1‑76 (MQ=255) nttGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAttt > 1:1052872/2‑76 (MQ=255) tGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTtat < 2:12412/76‑1 (MQ=255) aaTATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg > 2:613484/1‑76 (MQ=255) aaTATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg > 1:912066/1‑76 (MQ=255) aaTATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAg > 1:758189/1‑76 (MQ=255) atatCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGt > 1:837687/1‑76 (MQ=255) atatCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGt > 1:801785/1‑76 (MQ=255) atatCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGt < 1:73738/76‑1 (MQ=255) atCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCa > 1:520068/1‑76 (MQ=255) atCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCa > 2:954630/1‑76 (MQ=255) atCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTAGGGTCAGTACAAACTTTGATTTATAGTCa < 1:337835/76‑1 (MQ=255) tCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAg > 2:318415/1‑76 (MQ=255) tCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAg < 2:100309/76‑1 (MQ=255) cGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAgg > 1:1200813/1‑76 (MQ=255) aaTCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTgg > 2:676343/1‑76 (MQ=255) gACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCTTTGATTTATAGTCAGGTGGGCCtt > 1:681138/1‑76 (MQ=255) ccTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCtttt < 1:676343/76‑1 (MQ=255) ccTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCtttt < 1:808651/76‑1 (MQ=255) tataTGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtct > 2:314771/1‑76 (MQ=255) tatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTctct > 2:1172984/1‑76 (MQ=255) tGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt > 2:1076504/1‑76 (MQ=255) ccTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct < 2:203360/76‑1 (MQ=255) ccTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct < 1:1177010/76‑1 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg < 2:982335/76‑1 (MQ=255) cGTGTTTATCAGTCCANCATTTTGGGGTCAGTNCAAACTTAGATTTATAGTCAGGTGGGGCTTTTNTCTGTCNGnc > 1:97202/1‑76 (MQ=255) cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGcc > 1:939061/1‑76 (MQ=255) cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGcc > 2:577683/1‑76 (MQ=255) cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGcc > 2:577672/1‑76 (MQ=255) cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCGCTGTCTGcc > 1:48022/1‑76 (MQ=255) gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt < 1:385701/76‑1 (MQ=255) gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt > 1:362092/1‑76 (MQ=255) gtgtATAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt > 2:1299630/1‑76 (MQ=255) gtTTAACTGTCCNACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt > 1:12535/1‑76 (MQ=255) gtTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt > 2:81318/1‑76 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt > 1:924555/1‑76 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTg < 1:328808/76‑1 (MQ=255) tCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATa > 2:1082176/1‑76 (MQ=255) ccAACTTTNTCGGGTCAGTNCAAACTTTGATTTATAGTCAGGNGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATAc < 2:1099127/76‑1 (MQ=255) ccAACTTTNTCGGGTCAGTNCAAACTTTGATTTATAGTCAGGNGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATAc < 2:1099113/76‑1 (MQ=255) tttttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgag < 1:1143232/76‑1 (MQ=255) tttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGAc < 2:4016/76‑1 (MQ=255) ttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACa > 1:200025/1‑76 (MQ=255) ttGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACa < 1:1045314/76‑1 (MQ=255) gTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAg < 2:369083/76‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGtctc < 2:311574/76‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGtctc < 1:895586/76‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGtctc < 2:87877/76‑1 (MQ=255) gTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGtctc < 2:87892/76‑1 (MQ=255) tACAAACTTTGATNTATAGTCAGGTGGGGCGTTTCTCTGTCTGCCATTCGGTGAATACCTGAGACAAACAGTCTCa < 2:1203409/76‑1 (MQ=255) aCAAACTTTGATTTATAGTCAGGTGGGGTTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCaa < 2:395654/76‑1 (MQ=255) aaaCTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGc < 2:363770/76‑1 (MQ=255) | CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTCAAGC > REL606/3652460‑3652608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |