| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 474,656 | Δ1 bp | coding (650/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 474,656 | 0 | C | . | 94.6% | 149.3 / 5.0 | 38 | coding (650/1677 nt) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base . (10/25); minor base G (0/2); total (11/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.41e-01 | |||||||||||
CAACCCCTAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCGCGCTGCGTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGAT > REL606/474591‑474729 | cAACCCCTAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATcc < 2:1177415/76‑1 (MQ=255) aaCCCCTAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCa < 1:1145046/76‑1 (MQ=255) aaCCCCTAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCa < 1:1451911/76‑1 (MQ=255) cTAACGCCAGCGCCGGCGCCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCa < 1:1011849/76‑1 (MQ=255) tAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCAc > 2:108722/1‑76 (MQ=255) tAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCAG‑TCTG‑GTGCCATAATCCACGGCAc > 2:1271387/1‑76 (MQ=255) aaCGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCAcc < 2:441708/76‑1 (MQ=255) aaCGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCAcc < 2:1277721/76‑1 (MQ=255) aCGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCAccc > 2:94988/1‑75 (MQ=255) gccagcgccagcACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGa < 1:2980/76‑1 (MQ=255) ccagcgccagcACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGAc < 2:1724323/76‑1 (MQ=255) ccagcgccagcACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGAc > 2:1670531/1‑76 (MQ=255) cagcgccagcACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACg < 1:1090611/76‑1 (MQ=255) cgccagcACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCg < 2:1100226/76‑1 (MQ=255) cgccagcACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAAGCCACGGCACCAGACGGCg < 2:1485549/76‑1 (MQ=255) ccACCGCCAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTa < 1:1063464/75‑1 (MQ=255) aCCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTAcc < 2:1400290/76‑1 (MQ=255) ccGACGGGGTAAACAGCTCGCGAAGACCGGTGGCCG‑TC‑GGGTGCCATAACCCACGGCACCGGACGGCGACCTACCa < 2:573834/76‑1 (MQ=255) ccGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCa < 2:1200440/76‑1 (MQ=255) ccGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCa < 2:652588/76‑1 (MQ=255) aCAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCATGGCACCAGACGGCGACCTACCAGca > 2:1402716/1‑76 (MQ=255) aCAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGca < 2:91279/76‑1 (MQ=255) aCAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGca < 2:652847/76‑1 (MQ=255) cAGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GGGCCATAATCCACGGCACCAGACGGCGACCTACCAGcat > 2:665252/1‑76 (MQ=255) aGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGcatc < 2:1147626/76‑1 (MQ=255) aGGGTAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GGGCCATAATCCAAGGCACCAGACCGCGGACTACCAAcatc > 2:702457/1‑76 (MQ=255) tAAACAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATaa > 2:1708694/1‑76 (MQ=255) aaCAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATg < 1:1307190/76‑1 (MQ=255) cggCTCGCGAGACCCGGTTGCCG‑TC‑GGGTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGc < 1:73623/74‑1 (MQ=255) cAGCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGc > 2:1510096/1‑76 (MQ=255) gCTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGa < 1:81577/76‑1 (MQ=255) cTCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGAt < 1:1660510/76‑1 (MQ=255) tCGCGAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATa < 1:1520726/76‑1 (MQ=255) gcgcgAAAACCGGTTGCCG‑TCTG‑GGGCCATAATCCACGGCCCCAGACGGCGACCTACCAGCATCATAATGGCGATa < 2:882217/75‑1 (MQ=255) cgcgAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATaa > 2:6488/1‑76 (MQ=255) cgcgAGAACCGGTTGCCG‑TCT‑TGTGCCCTAAACCACCGCCCCCGACGGCGACCCACCCGCATCATAAAAGCGATaa > 2:1553654/1‑76 (MQ=255) gcgAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATaaa < 1:524767/76‑1 (MQ=255) gcgAGAACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATaaa < 1:1221071/76‑1 (MQ=255) gagaACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCCGCATCACAAAGGCGATaacaa > 2:1455654/1‑73 (MQ=255) agaACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGc > 2:21734/1‑76 (MQ=255) agaACCGGTTGCCG‑TCTG‑GTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGc > 2:1296216/1‑76 (MQ=255) gaACCGGTTGCCG‑TCTG‑GGGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAAACGCGATAAATGCg > 2:1358454/1‑76 (MQ=255) tGCGTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGAt > 1:26324/1‑76 (MQ=255) | CAACCCCTAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACCGGTTGCCGCGCTGCGTGCCATAATCCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGAT > REL606/474591‑474729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |