New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2718696	73 (1.350)	6 (0.130)	4/130	5.4	8.6%	intergenic (‑68/+12)	recA/ygaD	recombinase A/competence damage‑inducible protein A
	?	REL606	= 2718698	64 (1.370)					intergenic (‑70/+10)	recA/ygaD	recombinase A/competence damage‑inducible protein A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCCATTTTTACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTGACGACGCA  >  REL606/2718623‑2718772                                                                            |                                                                           aGCCATTTTTACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCt                                                                            >  1:971208/1‑76 (MQ=255)   ccATTTTTACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCa                                                                          <  1:933602/76‑1 (MQ=255)     aTTTTTACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATa                                                                        <  1:718831/76‑1 (MQ=255)     aTTTTTACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATa                                                                        <  1:437815/76‑1 (MQ=255)      tttttACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATAc                                                                       <  1:1334059/76‑1 (MQ=255)       ttttACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACa                                                                      <  2:1327440/76‑1 (MQ=255)        tttACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAg                                                                     <  1:818615/76‑1 (MQ=255)        tttACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAg                                                                     >  1:1461152/1‑76 (MQ=255)         ttACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGt                                                                    >  2:892674/1‑76 (MQ=255)          tACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTa                                                                   <  2:1266002/76‑1 (MQ=255)            cTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATc                                                                 >  2:1259293/1‑76 (MQ=255)             tCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCa                                                                <  1:797199/76‑1 (MQ=255)             tCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCa                                                                <  1:871192/76‑1 (MQ=255)             tCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCa                                                                <  1:1075576/76‑1 (MQ=255)              ccTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCaa                                                               >  1:658503/1‑76 (MQ=255)               cTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAg                                                              >  2:1208190/1‑76 (MQ=255)               cTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAg                                                              <  1:1364992/76‑1 (MQ=255)                 gTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAgtg                                                            >  2:1655314/1‑76 (MQ=255)                  tCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAgtgt                                                           >  2:1308666/1‑76 (MQ=255)                     tGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGtttt                                                        <  2:70506/76‑1 (MQ=255)                       ccGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGt                                                      >  2:1012713/1‑76 (MQ=255)                       ccGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGt                                                      >  1:1497048/1‑76 (MQ=255)                        cGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTa                                                     >  2:565660/1‑76 (MQ=255)                         gggTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAg                                                    >  1:953024/1‑76 (MQ=255)                            tAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGaaa                                                 >  1:738144/1‑76 (MQ=255)                             aaTACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAt                                                <  2:1354909/76‑1 (MQ=255)                             aaTACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAt                                                <  2:1043290/76‑1 (MQ=255)                             aaTACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAt                                                <  2:1090544/76‑1 (MQ=255)                             aaTACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACCGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAt                                                >  1:947163/1‑76 (MQ=255)                              aTACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAtt                                               >  2:1357067/1‑76 (MQ=255)                              aTACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAtt                                               >  2:1071353/1‑76 (MQ=255)                               tACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAttg                                              >  2:24785/1‑76 (MQ=255)                                  cGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAttgttg                                           >  1:1322700/1‑76 (MQ=255)                                  cGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAttgttg                                           >  2:500656/1‑76 (MQ=255)                                  cGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAttgttg                                           >  1:762206/1‑76 (MQ=255)                                   ggATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAAttgtttc                                          >  1:658467/1‑74 (MQ=255)                                   ggATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGc                                          >  1:435455/1‑76 (MQ=255)                                   ggATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGc                                          >  1:492028/1‑76 (MQ=255)                                    gATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGcc                                         <  1:621434/76‑1 (MQ=255)                                     aTAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCca                                        >  1:630822/1‑76 (MQ=255)                                          cAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGGCACAAgg                                   >  2:1296143/1‑76 (MQ=255)                                          cAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAgg                                   >  1:350566/1‑76 (MQ=255)                                          cAATATGTGCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTGTTGTAGAAATTGTTGCCACAAgg                                   <  2:878531/76‑1 (MQ=255)                                            atatGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTc                                 >  2:680168/1‑76 (MQ=255)                                             tatGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCt                                <  1:138545/76‑1 (MQ=255)                                              atGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTg                               <  1:143991/76‑1 (MQ=255)                                              atGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTg                               <  2:71900/76‑1 (MQ=255)                                              atGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTg                               <  1:176230/76‑1 (MQ=255)                                                gTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCa                             <  2:618740/76‑1 (MQ=255)                                                 ttCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCaa                            >  1:853008/1‑76 (MQ=255)                                                 ttCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCaa                            <  1:1626141/76‑1 (MQ=255)                                                   cTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATg                          >  2:1490500/1‑76 (MQ=255)                                                     gTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCa                        <  1:818846/76‑1 (MQ=255)                                                     gTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCa                        <  1:141413/76‑1 (MQ=255)                                                     gTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCa                        <  1:1524295/76‑1 (MQ=255)                                                     gTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCa                        <  1:334469/76‑1 (MQ=255)                                                      ttGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCAt                       <  1:694078/76‑1 (MQ=255)                                                      ttGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCAt                       <  1:692784/76‑1 (MQ=255)                                                      ttGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCAt                       >  1:1488901/1‑76 (MQ=255)                                                      ttGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCAt                       >  1:1589748/1‑76 (MQ=255)                                                        gAAGCAATTATACTGTATGCTCATACAGTATCAAGTGATTTGTAGAAATCGTTGNCACAAGGTCTGCAATGCATAc                     >  2:284301/1‑76 (MQ=255)                                                             aaTTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGt                >  1:764469/1‑76 (MQ=255)                                                             aaTTATACTGTATGCTCAGACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGt                <  1:990853/76‑1 (MQ=255)                                                              aTTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTa               >  2:1389437/1‑76 (MQ=255)                                                               ttATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAg              >  2:607819/1‑76 (MQ=255)                                                                tataCTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGc             >  1:1167279/1‑76 (MQ=255)                                                                 ataCTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGcc            >  1:582209/1‑76 (MQ=255)                                                                   aCTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTg          >  1:368410/1‑76 (MQ=255)                                                                   aCTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTg          <  2:886672/76‑1 (MQ=255)                                                                      gTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTgacg       >  1:349574/1‑76 (MQ=255)                                                                       tATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTgacga      >  2:1712920/1‑76 (MQ=255)                                                                       tATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTgacga      >  1:698394/1‑76 (MQ=255)                                                                        aTGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTgacgac     >  1:402426/1‑76 (MQ=255)                                                                           cTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTGACGACGCa  <  1:834439/76‑1 (MQ=255)                                                                            |                                                                           AGCCATTTTTACTCCTGTCATGCCGGGTAATACCGGATAGTCAATATGTTCTGTTGAAGCAATTATACTGTATGCTCATACAGTATCAAGTGTTTTGTAGAAATTGTTGCCACAAGGTCTGCAATGCATACGCAGTAGCCTGACGACGCA  >  REL606/2718623‑2718772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.