New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 223439249 (0.870)3 (0.060) 3/142 7.6 6.1% coding (744/1008 nt) yejK nucleoid‑associated protein NdpA
?REL606 = 2263367 NA (NA)noncoding (141/768 nt) IS1 repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCTATAAACCTG  >  REL606/2234320‑2234463
                                                                        |                                                                       
gAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGctct                                                                      >  2:1136717/1‑76 (MQ=255)
 aaGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCtt                                                                     <  1:147822/76‑1 (MQ=255)
 aaGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCtt                                                                     <  1:398320/76‑1 (MQ=255)
   gCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTc                                                                   <  1:426643/76‑1 (MQ=255)
    ctctctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCg                                                                  >  2:1712083/1‑76 (MQ=255)
    ctctctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCg                                                                  >  2:1642852/1‑76 (MQ=255)
     tctctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGa                                                                 <  2:1456550/76‑1 (MQ=255)
      ctctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGAc                                                                >  2:696373/1‑76 (MQ=255)
      ctctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGAc                                                                >  2:348549/1‑76 (MQ=255)
      ctctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGAc                                                                <  1:40597/76‑1 (MQ=255)
      ctctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGAc                                                                <  2:1215936/76‑1 (MQ=255)
        ctTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAg                                                              <  2:1423919/76‑1 (MQ=255)
          tCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCg                                                            <  2:491271/76‑1 (MQ=255)
           ccAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGa                                                           <  2:200102/76‑1 (MQ=255)
              gTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGAttt                                                        <  1:69416/76‑1 (MQ=255)
               ttCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTc                                                       <  1:1224196/76‑1 (MQ=255)
               ttCGTAGCCTTTTCCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTc                                                       <  1:1569088/76‑1 (MQ=255)
                tCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCa                                                      <  1:1156475/76‑1 (MQ=255)
                 cGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAg                                                     >  1:437346/1‑76 (MQ=255)
                  gTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGt                                                    >  1:670097/1‑76 (MQ=255)
                   tAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGtt                                                   <  1:1187076/76‑1 (MQ=255)
                   tAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGtt                                                   >  1:1728245/1‑76 (MQ=255)
                    aGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTc                                                  >  2:1528976/1‑76 (MQ=255)
                         ttttCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGAtct                                             >  2:1629721/1‑76 (MQ=255)
                            tCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCtt                                          <  2:196281/76‑1 (MQ=255)
                             cAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGCTTTCAGTTCGATCTCTTc                                         >  2:188701/1‑76 (MQ=255)
                              aGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCACTTCg                                        >  1:1527763/1‑76 (MQ=255)
                              aGCCGCAAACTCCGTGAAGCTCACTTCGATTACGCCTGCCAGCTCTTTCGACAGCGCTTTCAGTTAGATCTCTGCg                                        >  2:368387/1‑76 (MQ=255)
                                 cGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCgcct                                     <  1:571219/76‑1 (MQ=255)
                                 cGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCgcct                                     <  1:353071/76‑1 (MQ=255)
                                   cAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCgcctgc                                   >  2:395830/1‑76 (MQ=255)
                                   cAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCgcctgc                                   >  2:223232/1‑76 (MQ=255)
                                     aaCTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCgcctgcct                                 <  1:1533316/76‑1 (MQ=255)
                                         ccGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAg                             >  1:573853/1‑76 (MQ=255)
                                            tGAAGCTCCCTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAgctg                          <  1:1607449/76‑1 (MQ=255)
                                            tGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAgctg                          >  2:844718/1‑76 (MQ=255)
                                              aaGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAgctgct                        >  2:350599/1‑76 (MQ=255)
                                                gCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCa                      <  2:978253/76‑1 (MQ=255)
                                                 cTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCAt                     <  1:1482726/76‑1 (MQ=255)
                                                   cACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTa                   >  2:938006/1‑76 (MQ=255)
                                                    aCTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTCCCTGCAGCTGCTCATTAc                  >  2:948855/1‑76 (MQ=255)
                                                          cTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGc            >  1:876053/1‑76 (MQ=255)
                                                           ttACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCt           >  1:110203/1‑76 (MQ=255)
                                                            tACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCta          >  2:1289345/1‑76 (MQ=255)
                                                             aCGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGTTCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCtat         <  1:1398473/76‑1 (MQ=255)
                                                                 ctcccAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCTATAAAc     <  1:217131/73‑1 (MQ=255)
                                                                   gCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCTATAAACct   >  2:1340429/1‑76 (MQ=255)
                                                                   gCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCTATAAACct   >  2:412527/1‑76 (MQ=255)
                                                                    ccAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCTATAAACctg  <  2:259300/76‑1 (MQ=255)
                                                                        |                                                                       
GAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTCAGTTCGATCTCTTCGCCTGCCTGCAGCTGCTCATTACAGTAGCTATAAACCTG  >  REL606/2234320‑2234463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.