| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 69 [0] | [1] 71 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 0 (0.000) | 50 (1.290) | 34/104 | 0.1 | 99.0% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 1 (0.030) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
GCTCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCCT > REL606/2122379‑2122529 | aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt < 2:1370144‑M2/1‑1 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 2:1456064‑M2/76‑76 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 1:949489‑M2/76‑76 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 2:449673‑M2/76‑76 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 2:1451384‑M2/76‑76 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 1:949503‑M2/76‑76 (MQ=255) taaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCAt > 2:562803‑M2/70‑76 (MQ=255) aaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATaa > 1:1335323‑M2/68‑76 (MQ=255) aaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATaa < 1:354713‑M2/9‑1 (MQ=255) aatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAg > 1:1756352‑M2/67‑76 (MQ=255) tgctagctgtaccaggaaccgcctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGcc < 1:547988‑M2/12‑1 (MQ=255) ttGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCt < 1:1298911/76‑1 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCt > 2:1082582‑M2/63‑76 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCt < 1:1514353‑M2/14‑1 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa < 2:400006‑M2/15‑1 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa < 2:1197175‑M2/15‑1 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa > 2:138906‑M2/62‑76 (MQ=255) tgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtctc > 1:59860‑M2/58‑76 (MQ=255) tgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtctc > 1:1739282‑M2/58‑76 (MQ=255) tgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtctc > 1:1101998‑M2/58‑76 (MQ=255) gtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATctct < 2:829242‑M2/20‑1 (MQ=255) taccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTg < 1:1607682‑M2/21‑1 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa > 1:216559‑M2/53‑76 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa > 2:1373566‑M2/53‑76 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa > 2:1562236‑M2/53‑76 (MQ=255) caggaaccacctccttagcctgtgtaatcgcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa < 2:302299‑M2/24‑1 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa > 2:937646‑M2/52‑76 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa > 2:1086171‑M2/52‑76 (MQ=255) ggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAc < 1:734424‑M2/26‑1 (MQ=255) gaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAcc < 1:141135‑M2/27‑1 (MQ=255) gaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAcc < 2:364481‑M2/27‑1 (MQ=255) gaaccacctccttagcctgtgtaatctcccttacacgagcttattttttTATGCATAAGCCCTATCTCTGGTAAcc < 2:1455906‑M2/27‑1 (MQ=255) ccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTc > 2:130948‑M2/47‑76 (MQ=255) cacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCt < 2:1110029‑M2/31‑1 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt > 1:759121‑M2/45‑76 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt < 2:1145636‑M2/32‑1 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt < 2:1718138‑M2/32‑1 (MQ=255) tccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCa > 1:1332943‑M2/42‑76 (MQ=255) cttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCAtt > 1:539487‑M2/40‑76 (MQ=255) cttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCATATCTCTGGTAACCGTCTTCCAtt < 1:642477‑M2/37‑1 (MQ=255) ttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg > 2:1073130‑M2/39‑76 (MQ=255) ttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg < 1:220276‑M2/38‑1 (MQ=255) tgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACcaca > 1:970228‑M2/33‑76 (MQ=255) tgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACcaca > 1:792411‑M2/33‑76 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCAcatac > 2:1432147‑M2/30‑74 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCg > 2:1080448‑M2/30‑76 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCg > 1:953883‑M2/30‑76 (MQ=255) taatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGa > 1:1142162‑M2/29‑76 (MQ=255) aatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAt < 1:1321733‑M2/49‑1 (MQ=255) tctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAg < 1:1100984‑M2/51‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa > 1:740564‑M2/25‑76 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt > 2:939517‑M2/23‑76 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt < 1:962902‑M2/54‑1 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt < 2:493746‑M2/54‑1 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt > 2:1621266‑M2/23‑76 (MQ=255) ttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcct < 2:1689487‑M2/57‑1 (MQ=255) tacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcctc > 2:1151368‑M2/19‑76 (MQ=255) acacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcctcc < 1:283406‑M2/59‑1 (MQ=255) cacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATcctcct > 1:1284971‑M2/17‑76 (MQ=255) cgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTc > 2:651670‑M2/15‑76 (MQ=255) gggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCa > 1:750724‑M2/14‑76 (MQ=255) gcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATa < 1:719507‑M2/65‑1 (MQ=255) gcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATa < 1:1399284‑M2/65‑1 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAg < 1:1001705‑M2/66‑1 (MQ=255) ttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGc > 1:191857‑M2/10‑76 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa < 2:451704‑M2/68‑1 (MQ=255) tttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGa < 2:1425317‑M2/71‑1 (MQ=255) ttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAt > 1:46550‑M2/5‑76 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 2:468613‑M2/3‑76 (MQ=255) tTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGcc > 1:130279‑M2/2‑76 (MQ=255) tATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCCt < 1:1366736/76‑1 (MQ=255) | GCTCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCCT > REL606/2122379‑2122529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |