| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 37 (0.830) | 26/144 | 0.5 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 49 (1.100) | 35/144 | 0.2 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772781‑2772924 | gAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAAcccc < 1:706016/76‑1 (MQ=255) aaaTTTTGATTCATCGTGATGACCGGTTTATCCCCCCCGGGGCGGGGGGGACCCCGAACGGGGGGGGGAAAAAccc > 1:495012/1‑76 (MQ=255) aaTTTTGATTCATCTTGTGGACCGGTTTATCCCCGGTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCAt < 1:230996/76‑1 (MQ=37) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCAt < 1:1143583/76‑1 (MQ=255) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCAt < 1:631467/76‑1 (MQ=255) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCAt < 1:578663/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATaa < 1:1450552/76‑1 (MQ=255) gATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGCGGAACACCCTGCAC‑‑GTNGGGGAAAAACCCCATAAgcgc > 2:252157/1‑76 (MQ=37) aTTCTTCGTGATGACCGGTTTACCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCt < 1:696219/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCt < 1:1183021/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCt < 1:349133/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCt < 1:1206259/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCt < 1:295098/76‑1 (MQ=255) aTTCAGCGTGATGACCGGTTTACCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCt < 1:562152/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTa < 2:1333550/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTaa < 1:946738/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGGAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTa < 2:600904/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGGACACCCTGAAC‑‑GGGGGGGAAAAACCCCATAAGCGCTAACTTAAg > 2:928349/1‑76 (MQ=255) gatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAgg < 1:492761/76‑1 (MQ=255) ggTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTgg > 2:1134901/1‑76 (MQ=255) ggTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAAACCCATAAGCGCTAACTTAAGGGTTGTgg > 2:547537/1‑76 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:626732/76‑1 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:321392/76‑1 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt > 2:106040/1‑76 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:394297/76‑1 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:1492366/76‑1 (MQ=255) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt > 2:1338199/1‑76 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:1331674/1‑76 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:1393372/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 1:279336/1‑76 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 2:280177/76‑1 (MQ=255) cGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:1230437/76‑1 (MQ=255) cgcgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg > 1:1169482/1‑76 (MQ=255) ggggAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 2:1519322/1‑76 (MQ=255) ggggAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 1:888465/1‑76 (MQ=255) gggAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:185338/76‑1 (MQ=255) gggAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt > 2:934888/1‑76 (MQ=255) aaCACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc > 2:1090315/1‑76 (MQ=255) aaCACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc > 2:125388/1‑76 (MQ=255) aaC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:856235/76‑1 (MQ=255) aC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:1469046/76‑1 (MQ=255) c‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa > 2:418801/1‑76 (MQ=255) ggTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:397565/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 1:906881/1‑76 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:792953/1‑76 (MQ=40) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc > 1:1362179/1‑76 (MQ=39) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc > 1:800596/1‑76 (MQ=39) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:1310845/76‑1 (MQ=39) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:1310861/76‑1 (MQ=39) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:1322494/76‑1 (MQ=39) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc > 1:755127/1‑76 (MQ=39) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:312428/76‑1 (MQ=39) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc < 1:703775/76‑1 (MQ=32) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGCGCCGATGAATTACtctc < 1:400793/76‑1 (MQ=17) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa > 1:1357244/1‑76 (MQ=31) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa > 1:1316602/1‑76 (MQ=31) | GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772781‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |