Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,733,719 | 0 | C | G | 25.6% | 93.4 / 10.9 | 39 | G63G (GGC→GGG) | gumD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
Reads supporting (aligned to +/- strand): ref base C (1/28); new base G (10/0); total (11/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.73e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGTAT > REL606/3733648‑3733794 | gtgAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAag < 1:1350716/76‑1 (MQ=255) ggtggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGc < 2:1642681/76‑1 (MQ=255) ggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGAt < 2:1258108/76‑1 (MQ=255) ggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGAt < 2:1138507/76‑1 (MQ=255) ggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGAt < 2:1581286/76‑1 (MQ=255) ggATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGAt < 1:330966/76‑1 (MQ=255) gATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGAAGAGATTGGCGagg > 2:104995/1‑74 (MQ=255) tCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTc < 2:1155613/76‑1 (MQ=255) tCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTc < 2:351028/76‑1 (MQ=255) cTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCg > 1:933793/1‑76 (MQ=255) cTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCg < 1:32414/76‑1 (MQ=255) tGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGa < 1:954384/76‑1 (MQ=255) tGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGa < 1:53678/76‑1 (MQ=255) gAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGAAGAGGTCGGCGATGGCGaa > 2:1557304/1‑76 (MQ=255) aaTATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTTGGCGCTGTCGGAg > 2:1049485/1‑76 (MQ=255) atatCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGATCGGCGATGTCGAAGc > 2:1691616/1‑76 (MQ=255) tatCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCg < 1:1156786/76‑1 (MQ=255) atCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGGGGGGTCGAAGCGa > 1:613162/1‑76 (MQ=255) cGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGAtt < 2:654641/76‑1 (MQ=255) gCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAAAGGTTGGGGATGTCGGAGCGGttt > 1:92118/1‑76 (MQ=255) gCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGAttt < 2:1180986/76‑1 (MQ=255) cAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTTGGCGGTGTCGAAGCGGtttt > 1:524624/1‑76 (MQ=255) cAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCGAAGCGAtttt > 2:1193824/1‑76 (MQ=255) aGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCGGAGGGGttttt > 1:1054788/1‑75 (MQ=255) gACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTcc < 2:961588/76‑1 (MQ=255) aCTATATGGATAAGCAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCa < 2:810332/76‑1 (MQ=255) tataTGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACg < 1:1058525/76‑1 (MQ=255) tataTGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACg < 1:1035478/76‑1 (MQ=255) gATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGgcg < 1:1141273/76‑1 (MQ=255) aTAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGGAGAGGTCGGCGGTGTCGGAGCGGTTTTTCACGAAGgcgc > 1:1504700/1‑76 (MQ=255) aTAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGgcgc < 1:103696/76‑1 (MQ=255) aaGGAAGACTTCCTGATCCAGATTATGGCTGGGGGAGAGGTCGGCGGTGTCGGAGCGGTTTTTCACGAAAgcgccg > 1:1254063/1‑74 (MQ=255) aaGACTTCCTGATCCAGATTATGGCTGGGGAAGAGGTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGctc > 2:1249204/1‑76 (MQ=255) aCTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTc < 2:122959/76‑1 (MQ=255) aCTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTc < 1:1458018/76‑1 (MQ=255) ttCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTcca < 2:1023903/76‑1 (MQ=255) tCCTGATCCAGATTATGGCTGGGGGAGGGGTGGGCGGTGTCGACGCGACTTTCCACCCAAGCGGAAGCTCTTcctc > 2:322269/1‑74 (MQ=255) tCCTGATCCAGATTATGGCTGGGGGAGAGTTCGGCGGTGTGGAAGCGATTTTTCACCAAGGCGGACGGTCTTtcac > 2:1264857/1‑76 (MQ=255) cTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTccacca < 1:131394/76‑1 (MQ=255) tGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCcaccac < 2:757519/76‑1 (MQ=255) gATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCaccacc < 2:595851/76‑1 (MQ=255) aGATTATGGCTGGGGGAGAGGTCGGCGATGTCGGAGGGAGTTTTCACGAAAGGGCATGCTCTTCCACCACCGAgcg > 2:806010/1‑74 (MQ=255) aTTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTggg < 2:608214/76‑1 (MQ=255) ttATGGCTGGGGAAGAGGTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGCGTgggg > 2:1585704/1‑75 (MQ=255) aTGGCTGGCGAAGAGTTCGGCGNTGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATg > 2:230535/1‑76 (MQ=255) aTGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATg < 1:1325244/76‑1 (MQ=255) ggctggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGc < 2:555513/76‑1 (MQ=255) ggcGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGt < 1:415732/76‑1 (MQ=255) cGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGtat < 1:735488/76‑1 (MQ=255) cGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGtat < 2:256079/76‑1 (MQ=255) cGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGtat < 2:1107501/76‑1 (MQ=255) | GTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCGATGTCGAAGCGATTTTCCACGAAGGCGCATGCTCTTCCACCACCGAGTGGGATGGCAAGTAT > REL606/3733648‑3733794 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |