| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 56 (0.990) | 40/144 | 0.3 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 62 (1.100) | 45/144 | 0.2 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772780‑2772924 | cGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCCCCGGCGC‑GGGGGAAACCCCGAAAGGGGGGGGAAAAacc > 1:240397/1‑76 (MQ=255) aaaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCa < 2:353179/76‑1 (MQ=255) aaaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCa < 1:684375/76‑1 (MQ=255) ttttTATTCATCGTGATGACCGGTTTACCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATaa < 1:1177977/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATaa < 1:1720381/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATaa < 2:1830490/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 1:1549855/76‑1 (MQ=255) ttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGGACACCCCCGACCGTGGGGGGAAACCCCCAAAgc > 2:659918/1‑76 (MQ=18) ttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgc < 1:279184/76‑1 (MQ=255) ttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgc < 1:1612178/76‑1 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGGACACCCTGAACGGGGGGGGAAAAACCCATAAgcg > 2:1035253/1‑76 (MQ=37) tCATCGTGATGACCGGTTTACCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 1:1599222/76‑1 (MQ=255) aTCGTGATGACCGGTTTATCCCCGCTGGTGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACt < 1:1380001/76‑1 (MQ=255) aTCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACt < 1:149715/76‑1 (MQ=255) aTCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACt < 1:1743860/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:813795/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 2:97702/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTaa < 1:1016082/76‑1 (MQ=255) gatgaCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAgg < 1:794465/76‑1 (MQ=255) tgaCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGt < 1:1755648/76‑1 (MQ=255) tgaCCGGTTTATCCCCCCCGGGGCGGGGGAAAACCCGGACGGGGGGGGAAAAACCCCCAAACGGGCAACTTAAggg > 2:801019/1‑76 (MQ=255) tgaCCGGTTTACCCCCGCGGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGt < 1:875458/76‑1 (MQ=255) gaCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 2:1489810/76‑1 (MQ=255) ccGGTTTATCCCCGCTGGCGC‑GGGGGACACCCTGAACGGGGGGGGAAAACCCCATAAGCGCTAACTTAAGGGGtgg > 2:557542/1‑75 (MQ=37) ccGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtgt < 2:1796041/76‑1 (MQ=255) ccGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtgt > 2:38223/1‑76 (MQ=255) cGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtgtg < 1:200411/76‑1 (MQ=255) tttATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 2:1599118/76‑1 (MQ=255) tttATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 1:66557/76‑1 (MQ=255) ttATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTAt > 2:1216418/1‑76 (MQ=255) tATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTCACTTAAGGGTTGTGGTAtt > 1:1570559/1‑76 (MQ=255) tATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:895089/76‑1 (MQ=255) tATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1498629/76‑1 (MQ=255) tATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:71328/76‑1 (MQ=255) aTCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 2:160122/1‑76 (MQ=255) ccccGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 1:1012767/76‑1 (MQ=255) ccccGCGGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 1:612997/76‑1 (MQ=255) ccccGCGGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 1:775342/76‑1 (MQ=255) ccGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACGCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc < 1:442232/76‑1 (MQ=255) cGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:1798060/76‑1 (MQ=255) gCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg > 1:677486/1‑76 (MQ=255) cTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 2:1349128/1‑76 (MQ=255) ggCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata < 1:806318/76‑1 (MQ=255) ggCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata < 1:1780928/76‑1 (MQ=255) ggCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata > 2:497212/1‑76 (MQ=255) cgc‑gGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg > 1:1042509/1‑76 (MQ=255) gc‑gGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 1:250651/76‑1 (MQ=255) c‑gGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:1615534/1‑76 (MQ=255) c‑gGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 2:1528454/1‑76 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt < 2:575661/76‑1 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:360051/76‑1 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:75424/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa > 2:1120136/1‑76 (MQ=255) acacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg < 1:977349/76‑1 (MQ=255) acacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg < 1:1802827/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:762168/76‑1 (MQ=255) acCCGGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:762185/76‑1 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:167692/1‑76 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg < 1:245804/76‑1 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:1485192/1‑76 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:498863/1‑76 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGGTATGATTTAACGTGCCGATg > 2:1615402/1‑76 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:468580/76‑1 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 2:236825/76‑1 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 2:1683613/76‑1 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 2:402776/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 2:1067611/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGCATTACGCCTGATATGATTTAACGTGCCGATGaa < 1:1213774/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 2:493050/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:250954/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:395000/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 1:1154357/1‑76 (MQ=40) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc > 1:1610795/1‑76 (MQ=32) aaaaCCCCATAAGCGCTAACTNCAGGCTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 2:303735/76‑1 (MQ=255) | CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772780‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |