| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 475,295 | Δ1 bp | coding (11/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 475,294 | 0 | G | . | 90.0% | 119.9 / 4.9 | 30 | coding (12/1677 nt) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base . (14/13); total (16/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAG > REL606/475228‑475364 | aTTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCTACAATGGTGGTGATAATCGGGGT‑GCGTGATGCa > 2:774970/1‑76 (MQ=255)aTTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCa > 2:665665/1‑76 (MQ=255) ttGGCCAGCATGCCGAGNATCAAGGCGAGCACAAGGCCGCCAACAATGGTGNTGATTATC‑GCGCGGCGTGATGCAt > 2:949748/1‑76 (MQ=255) gCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGG‑GGCGTGATGCATTcc > 2:26024/1‑76 (MQ=255) ccAGCATGCCGAGGATAAAGGCGANCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCg > 2:212750/1‑76 (MQ=255) cAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGt > 1:608842/1‑76 (MQ=255) gCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCtt < 2:767079/76‑1 (MQ=255) gAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTc < 1:1088659/76‑1 (MQ=255) aTAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGAGATGCATTCCGTCTCCTTTTCCtgg > 2:917310/1‑76 (MQ=255) cGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTAt > 1:1121960/1‑76 (MQ=255) cGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTAt > 2:389418/1‑76 (MQ=255) gAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGAGGTTAtt > 2:470148/1‑76 (MQ=255) caAGGCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCa > 1:243639/1‑76 (MQ=255) ggCCGCCAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCAttt < 1:142640/76‑1 (MQ=255) gccgccAACAATGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCAtttt < 2:151310/76‑1 (MQ=255) aacaaTGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCg > 2:382121/1‑76 (MQ=255) caaTGGTGGTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCggn < 1:5524/76‑2 (MQ=255) tggtggTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaa < 2:1117151/76‑1 (MQ=255) tggtggTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaa > 1:624157/1‑76 (MQ=255) tggtggTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaa < 1:780565/76‑1 (MQ=255) tggtggTGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaa < 1:837489/76‑1 (MQ=255) nggtggtGATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGaaa < 1:987678/75‑1 (MQ=255) tggtgATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGTCGGGAAAAcc < 1:842646/76‑1 (MQ=255) tggtgATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAAcc < 1:390953/76‑1 (MQ=255) ggtgATAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCa < 2:1122330/76‑1 (MQ=255) tgATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCaa < 1:286829/76‑1 (MQ=255) aTAAGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAAt > 2:394475/1‑76 (MQ=255) aaGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTa > 1:463708/1‑76 (MQ=255) aaGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTa > 1:230253/1‑76 (MQ=255) aGCGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTAc < 1:949748/76‑1 (MQ=255) cGGGGT‑GCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAg < 2:667705/76‑1 (MQ=255) | ATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAG > REL606/475228‑475364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |