New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 664687	1 (0.030)	23 (0.670)	19/144	0.9	94.0%	intergenic (‑78/‑48)	gltL/insJ‑2	ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein
	?	REL606	666134 =	2 (0.060)					pseudogene (354/387 nt)	gltL	ATP‑binding protein of glutamate/aspartate transport system; b0652_1

GCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG  >  REL606/664615‑664759                                                                         |                                                                         gctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGt                                                                       >  1:273085/1‑76 (MQ=255)  ctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg                                                                      <  1:420868‑M1/76‑5 (MQ=255)                    cTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGAAGTTTcagggctttttcacgagccggc                                                    >  1:671953‑M1/1‑54 (MQ=255)                        gcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctt                                                <  2:855939‑M1/76‑27 (MQ=255)                         ccGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgcttt                                               <  2:768293‑M1/76‑28 (MQ=255)                         ccGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgcttt                                               <  1:369159‑M1/76‑28 (MQ=255)                                   aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgcttcatcgcgttta                                     <  1:159939‑M1/76‑38 (MQ=255)                                   aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTGTcagggctttttcacgagccggcgctttatcgcgttta                                     <  1:804860‑M1/76‑38 (MQ=255)                                    ttGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaa                                    >  2:764794‑M1/1‑38 (MQ=255)                                     tGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttgag                                   >  1:549596‑M1/1‑37 (MQ=255)                                      ggCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagc                                  <  1:692573‑M1/76‑41 (MQ=255)                                          tGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactt                              >  2:310510‑M1/1‑32 (MQ=255)                                                     cccGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcacttacacctgcgcc                   <  1:569089‑M1/76‑56 (MQ=255)                                                      ccGACACGCTCCAGTAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgcca                  <  2:749299‑M1/76‑57 (MQ=255)                                                         acacGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccaggg               >  2:509742‑M1/1‑17 (MQ=255)                                                            cGCTCCAGCAGTTTcagggctttttcacgagccggcgttttatcgcgtttaagcactttcacctgctccagggtca            <  1:806370‑M1/76‑63 (MQ=255)                                                            cGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtca            <  1:80832‑M1/76‑63 (MQ=255)                                                             gCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcag           >  2:56497‑M1/1‑13 (MQ=255)                                                             gCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcag           >  1:379162‑M1/1‑13 (MQ=255)                                                               tCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggt         >  1:1045741‑M1/1‑11 (MQ=255)                                                                 cagcagTTTcagggctttttcacgagccggcgctttatcgcctttaancactttnacctgcgccagggtcatgttn       >  1:972415‑M1/1‑9 (MQ=255)                                                                  agcagTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggtttt      <  2:367744‑M1/76‑69 (MQ=255)                                                                   gcagTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttc     <  2:784371‑M1/76‑70 (MQ=255)                                                                      gTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgat  <  1:330008‑M1/76‑73 (MQ=255)                                                                         |                                                                         GCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTG  >  REL606/664615‑664759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.