New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	1425700 =	NA (NA)	4 (0.120)	4/140	4.1	21.1%	coding (164/267 nt)	ynaE	predicted DNA‑binding transcriptional regulator
	?	REL606	1425830 =	16 (0.450)					coding (34/267 nt)	ynaE	predicted DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

GGTGTCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACA  >  REL606/1425813‑1425905                  |                                                                            ngtgtCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAgg                   <  1:977569/75‑1 (MQ=14) ggTGTCTTTTGATTTCATGAAGATATTGCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAgg                   <  1:699942/76‑1 (MQ=14) ggTGTCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAgg                   >  2:611718/1‑76 (MQ=31)   tgacTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGat                 >  2:149965/4‑76 (MQ=21)     tCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGatat               <  2:812861/76‑1 (MQ=34)       ttttGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGt             >  2:515966/1‑76 (MQ=34)        tttGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGatat               <  1:652811/73‑1 (MQ=34)        tttGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGatat               >  2:652811/1‑73 (MQ=34)          tGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGa          <  2:603142/76‑1 (MQ=34)           gATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGAc         >  2:400740/1‑76 (MQ=34)            aTTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACt        >  2:793149/1‑76 (MQ=34)              ttCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTta      >  1:1109108/1‑76 (MQ=34)                cATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTtata    <  1:184617/76‑1 (MQ=34)                cATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTtata    <  2:18483/76‑1 (MQ=34)                 aTGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATAc   <  1:587900/76‑1 (MQ=34)                 aTGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATAGTGTATGTCTGATTCNGGATATGTTGACTTATAc   >  1:901013/1‑76 (MQ=19)                  tgatgaTATTCCTTAAAATATTATTTATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACa  <  2:978887/76‑1 (MQ=255)                  tGAGGATATTCCTTAAAATATTATTTATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACa  <  2:978896/76‑1 (MQ=255)                  |                                                                            GGTGTCTTTTGATTTCATGAAGATATTCCTTAAAATATTATTGATTTTCATTGCGATATTGTATGTCTGATTCAGGATATGTTGACTTATACA  >  REL606/1425813‑1425905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.