Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 1,689,712 (C)6→7 intergenic (+360/‑251) nth → / → ydgR DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/putative tripeptide transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6061,689,7061.C100.0% 200.6 / NA 48intergenic (+354/‑257)nth/ydgRDNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/putative tripeptide transporter permease
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (26/22);  total (26/22)

TGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACA  >  REL606/1689631‑1689772
                                                                            |                                                                  
tGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCa                                                                     >  2:599539/1‑76 (MQ=255)
   cTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑ccc                                                                 >  1:294658/1‑76 (MQ=255)
     aTTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑ccccc                                                               >  1:818686/1‑76 (MQ=255)
     aTTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCCCCGTTAAGCCATCA‑ccccc                                                               <  2:1000453/76‑1 (MQ=255)
        tttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑ccccccct                                                            <  2:1579627/76‑3 (MQ=255)
        tttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑ccccccct                                                            <  2:1404921/76‑3 (MQ=255)
         ttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑ccccccctc                                                           >  2:1708996/1‑73 (MQ=255)
         ttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑ccccccctc                                                           >  2:1046042/1‑73 (MQ=255)
            aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTca                                                         <  2:1005983/76‑1 (MQ=255)
             gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcag                                                        <  2:1290612/76‑1 (MQ=255)
              aaaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagt                                                       <  1:201337/76‑1 (MQ=255)
              aaaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagt                                                       <  1:201347/76‑1 (MQ=255)
              aaaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagt                                                       <  1:431662/76‑1 (MQ=255)
                  tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagtgcag                                                   >  2:81461/1‑76 (MQ=255)
                  tGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagtgcag                                                   >  2:1383275/1‑76 (MQ=255)
                    gACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTcagtgaagtg                                                 >  2:281082/1‑76 (MQ=255)
                       tATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGaaa                                              >  2:1757968/1‑76 (MQ=255)
                        aTCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGaaaa                                             >  1:503403/1‑76 (MQ=255)
                        aTCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGaaaa                                             <  1:1198610/76‑1 (MQ=255)
                           tcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAAt                                          >  2:688027/1‑76 (MQ=255)
                             aCTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCt                                        >  2:1527448/1‑76 (MQ=255)
                             aCTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTCAAGCCATCACCCCCCCNCTCAGTGCAGTGAAAAAATCt                                        >  2:293542/1‑76 (MQ=255)
                              cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTg                                       <  1:1113650/76‑1 (MQ=255)
                              cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTg                                       <  1:229473/76‑1 (MQ=255)
                                 gTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCg                                    >  1:532810/1‑76 (MQ=255)
                                 gTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCg                                    >  1:959508/1‑76 (MQ=255)
                                  tAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGt                                   >  1:1116813/1‑76 (MQ=255)
                                   aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGtt                                  >  1:1626707/1‑76 (MQ=255)
                                   aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGtt                                  >  1:997824/1‑76 (MQ=255)
                                    aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCTTCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTa                                 <  1:1266650/76‑1 (MQ=255)
                                     aaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTAc                                <  1:1232577/76‑1 (MQ=255)
                                     aaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTAc                                <  1:1232552/76‑1 (MQ=255)
                                     aaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTAc                                >  1:1128195/1‑76 (MQ=255)
                                       aCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGt                              <  1:1584394/76‑1 (MQ=255)
                                            aaaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttt                         >  1:1656249/1‑76 (MQ=255)
                                            aaaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttt                         >  2:589117/1‑76 (MQ=255)
                                            aaaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttt                         <  1:5783/76‑1 (MQ=255)
                                            aaaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttt                         >  2:1628205/1‑76 (MQ=255)
                                            aaaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGCTACGtttttt                         >  2:488525/1‑76 (MQ=255)
                                            aaaTAGCAGAACATATCGCCGTNAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGtttttt                         >  2:248575/1‑76 (MQ=255)
                                             aaTAGCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTg                        >  2:1449270/1‑76 (MQ=255)
                                                 gCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGtaaa                    >  1:32931/1‑76 (MQ=255)
                                                 gCAGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaaaa                    <  1:881630/76‑1 (MQ=255)
                                                   aGAACATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAt                  >  2:1163492/1‑76 (MQ=255)
                                                    gAACATATCGCCGTTAAGCCATCACCCCCCCTGTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAtt                 >  2:595368/1‑76 (MQ=255)
                                                     aaCATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAttt                <  2:1816103/76‑1 (MQ=255)
                                                     aaCATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAttt                <  2:321391/76‑1 (MQ=255)
                                                     aaCATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAttt                <  2:589523/76‑1 (MQ=255)
                                                       cATATCGCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa              <  2:1297050/76‑1 (MQ=255)
                                                             gCCGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTgg        <  1:608996/76‑1 (MQ=255)
                                                               cGTTAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGAt      >  1:1760467/1‑76 (MQ=255)
                                                                  tAAGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAAc   <  1:529007/76‑1 (MQ=255)
                                                                   aaGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa  <  1:322509/76‑1 (MQ=255)
                                                                   aaGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa  >  2:1348896/1‑76 (MQ=255)
                                                                   aaGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa  >  2:332768/1‑76 (MQ=255)
                                                                   aaGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa  <  2:635384/76‑1 (MQ=255)
                                                                   aaGCCATCACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa  >  2:76628/1‑76 (MQ=255)
                                                                            |                                                                  
TGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCATCA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACA  >  REL606/1689631‑1689772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑