| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1713928 = | 48 (0.840) | 3 (0.060) | 3/136 | 7.3 | 6.3% | pseudogene (239/779 nt) pseudogene (630/1167 nt) |
ydhP ydhP |
putative transport protein (MFS family); b1657_1 putative transport protein (MFS family); b1657_1 |
| ? | REL606 | 2092104 = | 46 (0.890) | coding (611/3078 nt) | yegO | multidrug efflux system, subunit C | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCTGGCAGAT > REL606/2092030‑2092179 | cAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTa < 2:228582/76‑1 (MQ=255) cgCTCCCTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTAc < 2:39930/75‑1 (MQ=255) cACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCAc > 2:1381875/1‑76 (MQ=255) tGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCAccgc > 2:756764/1‑76 (MQ=255) ccgccgTACGCGTCGGGCTGAAACCGGAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGt < 2:16794/76‑1 (MQ=255) cgccgTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCGCCGCCGTc < 2:1447679/76‑1 (MQ=255) gccgTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCa < 2:1768895/76‑1 (MQ=255) gccgTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGCCa < 2:605051/76‑1 (MQ=255) ccgTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAg > 1:1049563/1‑76 (MQ=255) tACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCaa < 1:160349/76‑1 (MQ=255) tACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCaa > 1:1146609/1‑76 (MQ=255) aCGCGTCGGGCTGAATCCGCAGGCTCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAAt < 1:348570/76‑1 (MQ=255) gTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCa < 1:424619/76‑1 (MQ=255) gTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCa < 1:1717769/76‑1 (MQ=255) gTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCa < 1:654288/76‑1 (MQ=255) cGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAAc < 2:140295/76‑1 (MQ=255) cGGGCTGAAGCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAAc < 1:620447/76‑1 (MQ=255) ggCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACgg > 1:1092250/1‑75 (MQ=255) gCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTg < 2:1442046/76‑1 (MQ=255) aTCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTaa > 1:872094/1‑76 (MQ=255) ccGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAAc > 1:1447496/1‑76 (MQ=255) cAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGc > 2:944146/1‑76 (MQ=255) aGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCa > 1:216528/1‑76 (MQ=255) gcgcTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAgg < 1:354371/76‑1 (MQ=255) ttAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCt > 1:731653/1‑76 (MQ=255) tAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTg > 2:1333227/1‑76 (MQ=255) aTCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGa < 2:1306428/76‑1 (MQ=255) aTCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGa > 2:587625/1‑76 (MQ=255) tCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGaa < 2:1381276/76‑1 (MQ=255) tCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGaa < 2:1427852/76‑1 (MQ=255) tCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGaa > 2:1518445/1‑76 (MQ=255) tCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGaa < 2:1444546/76‑1 (MQ=255) tCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTCGaa > 2:1120577/1‑76 (MQ=255) cAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCATAAACCGCAGGGCGCGCTGGAAg > 1:330752/1‑76 (MQ=255) gggCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGAt > 2:902818/1‑76 (MQ=255) ggCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATg < 1:638390/76‑1 (MQ=255) cGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGc > 1:630477/1‑76 (MQ=255) cGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGc > 1:1611639/1‑76 (MQ=255) gtCGCGGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACt < 1:563663/76‑1 (MQ=255) gCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAAATGGCACTCAc < 2:1198265/76‑1 (MQ=255) cgtgacgacGTCCGCTCCGCCGTCAGCAATGCCAACGTGCGTAAACCGAAGGGCGCGCTGGAAGATGGCACTCAcc < 2:363177/73‑1 (MQ=255) tGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCg > 2:1034476/1‑76 (MQ=255) ggACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGc > 2:1264437/1‑76 (MQ=255) ggACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGc > 2:730294/1‑76 (MQ=255) ggACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGc > 2:230756/1‑76 (MQ=255) ggACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGc > 1:612951/1‑76 (MQ=255) ggACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGc > 1:789117/1‑76 (MQ=255) gacgacGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCt > 2:503781/1‑76 (MQ=255) acgacgTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCTg > 2:1383419/1‑76 (MQ=255) gacgTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCTGGc > 2:1653138/1‑76 (MQ=255) tACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCATTCACCGCTGGCAGAt > 2:79318/1‑76 (MQ=255) tACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCTGGCAGAt > 2:374922/1‑76 (MQ=255) tACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCTGGCAGAt > 1:187652/1‑76 (MQ=255) tACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCTGGCAGAt > 2:95136/1‑76 (MQ=255) | CAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTCACCGCTGGCAGAT > REL606/2092030‑2092179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |