| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 97.6% | 158.4 / ‑2.7 | 41 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (22/18); total (22/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-01 | |||||||||||
AGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875552‑3875693 | aGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tt > 1:57099/1‑76 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttt > 1:159838/1‑76 (MQ=255) cATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑tttt < 1:1445459/76‑1 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttt < 2:557129/76‑1 (MQ=255) attattCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttt < 1:778240/76‑1 (MQ=255) ttCAACATACGCGTCCTGACTGTAATTCGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑ttttttttc > 2:140770/1‑74 (MQ=255) aCATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCg < 2:1537340/76‑1 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGt > 1:39838/1‑76 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGt > 2:1484841/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTg < 1:1643901/76‑1 (MQ=255) tACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGa > 2:532398/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGaa > 2:1691202/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGaa > 2:202224/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGaa > 1:923927/1‑76 (MQ=255) aCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGaa > 1:292406/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGaaa > 2:460475/1‑76 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGaaa < 1:379681/76‑1 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGaaa > 2:544281/1‑76 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATg < 1:497609/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATg < 1:155304/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATg > 1:1402502/1‑76 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATg < 2:315191/76‑1 (MQ=255) cTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTAAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACa < 2:321767/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACag < 1:1099614/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATa < 2:1236127/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATa > 2:201641/1‑76 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATa < 1:1201718/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATaa < 2:1379401/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATaaa > 1:632705/1‑76 (MQ=255) tttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAAt < 1:938761/76‑1 (MQ=255) agaACGAATTTAAACCGCTTCACCTTGAGAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGtt < 2:1676990/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 1:398122/1‑76 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 2:31112/1‑76 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 2:37862/76‑1 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTACATTTTTTTTT‑CATCGTGAAATGGAAAGAGGATAAATTGTTCAATAACgg > 1:1238073/1‑76 (MQ=255) aaCCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAtt > 1:1417715/1‑76 (MQ=255) aCCGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTa < 2:1266920/76‑1 (MQ=255) ccGCTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt > 2:94497/1‑76 (MQ=255) cTTCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATccc > 1:1563913/1‑76 (MQ=255) tCACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:900879/1‑76 (MQ=255) cACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGc > 2:637945/1‑76 (MQ=255) cACCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCAGc > 1:1082471/1‑76 (MQ=255) aCCTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCt < 1:211316/76‑1 (MQ=255) cTTGAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:207435/76‑1 (MQ=255) cTTGAAAAAACTACA‑‑TTTTTTNGCATAGTGAAATGGACTGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:272790/76‑1 (MQ=255) gAAAAAACTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa > 1:661056/1‑76 (MQ=255) aaaaaCTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa < 1:1035576/76‑1 (MQ=255) aaCTACAT‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGCCGAAAgcg < 1:346446/76‑1 (MQ=255) | AGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTACA‑‑TTTTTTT‑CATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCG > REL606/3875552‑3875693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |