| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 66 (1.300) | 53/144 | 0.0 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 47 (0.930) | 37/144 | 0.4 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
ATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 | aTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATa < 2:1083695/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAg < 2:567215/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAg < 2:567197/76‑1 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGACACCCCGAAC‑‑GGGGGGGGAAAAACCCCTAAacg > 2:1050676/1‑76 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGGAAAACCCCATAAGCGCt > 2:350531/1‑76 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGGGACCCCCAACGGGGGGGGGAAAACCCCCAAAAgcta > 1:332561/1‑74 (MQ=255) cATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAAc < 1:1398878/76‑1 (MQ=255) cATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAAc < 1:1411776/76‑1 (MQ=255) tCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACtt < 2:1596340/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAg < 1:1494873/76‑1 (MQ=255) gatgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAgg < 1:333920/76‑1 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAggg > 2:1549199/1‑76 (MQ=255) gaCCGGTTTCCCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:613210/76‑1 (MQ=255) gaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGGGGGGAAAAAACCCATAAGCGCTAACTTAAgggct > 2:500445/1‑74 (MQ=37) gTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTACGGGTTGTGGt > 2:176690/1‑76 (MQ=255) ttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 2:177841/1‑76 (MQ=255) ttACCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:1274957/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 1:1575237/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 2:862273/76‑1 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTCACTTAAGGGTTGTGGGATTaa > 2:253142/1‑75 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 1:878858/76‑1 (MQ=255) cccGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc < 1:1291290/76‑1 (MQ=255) cGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 2:454042/76‑1 (MQ=255) cGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:393199/76‑1 (MQ=255) tGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat > 1:1593236/1‑76 (MQ=255) cgcgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:732198/76‑1 (MQ=255) cgcgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:438382/76‑1 (MQ=255) cgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 1:1521870/76‑1 (MQ=255) cgGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGAt > 2:1331239/1‑76 (MQ=255) ggggAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt < 1:1104572/76‑1 (MQ=255) gggAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:1575237/76‑1 (MQ=255) ggAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 2:446217/76‑1 (MQ=255) gAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:505699/76‑1 (MQ=255) cacCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt > 2:1374362/1‑76 (MQ=255) cacCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt < 1:1430471/76‑1 (MQ=255) cTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg < 2:16226/76‑1 (MQ=255) gAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:1246622/76‑1 (MQ=255) aaC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 2:859/1‑76 (MQ=255) aC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATgn < 1:1524927/76‑2 (MQ=255) aC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:919724/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 2:207945/1‑76 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:866194/1‑76 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 2:1440391/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:1323898/1‑76 (MQ=40) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:988496/76‑1 (MQ=39) ggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc < 1:1617086/76‑1 (MQ=35) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 1:1447557/76‑1 (MQ=31) | ATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |