mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,296,329 | 0 | A | C | 36.4% | 95.0 / 24.3 | 55 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,004,106 | 0 | A | C | 36.2% | 78.9 / 24.5 | 47 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 3,492,082 | 0 | T | G | 32.4% | 61.4 / 13.2 | 34 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 154,497 | 0 | T | G | 31.6% | 107.6 / 20.7 | 57 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 1,688,990 | 0 | A | C | 30.4% | 94.8 / 14.7 | 46 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 2,417,495 | 0 | T | A | 30.0% | 81.5 / 10.4 | 40 | L24F (TTA→TTT) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
| * | REL606 | 2,209,372 | 0 | T | G | 25.6% | 81.4 / 11.1 | 39 | V61V (GTA→GTC) | yeiN | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4343372 | 57 (1.080) | 4 (0.080) | 4/134 | 6.4 | 7.8% | coding (392/1698 nt) | dsbD | thiol:disulfide interchange protein precursor |
| ? | REL606 | = 4343380 | 44 (0.930) | coding (384/1698 nt) | dsbD | thiol:disulfide interchange protein precursor | |||||