| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 61 (0.890) | 43/144 | 0.5 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 55 (0.810) | 41/144 | 0.7 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772780‑2772923 | cGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGGACACCCCGAACGGTGGGGGAAAAccc > 1:349182/1‑76 (MQ=37)cGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAAccc < 2:633004/76‑1 (MQ=255)cGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAAccc < 2:1554391/76‑1 (MQ=255) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCAt < 2:1600338/76‑1 (MQ=255) aTTTTGATTCATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGAAAACCCGCACAGGGGGGGAAAAACCCCaa > 1:1025164/1‑75 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATaa < 1:517633/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCCCCGGCGCGGGGGAAAACCCCGACGGGGGGGGGAAAAcccccaa > 1:1782835/1‑73 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 1:1370936/76‑1 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCCGGCGC‑GGGGAACACCCTGAACGGGGGGGAAAAACCCCATAAgcg > 1:2187630/1‑76 (MQ=255) gATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgcgc < 1:1143875/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCt > 2:177866/1‑76 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 2:1115925/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 2:1240262/76‑1 (MQ=255) cATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAAc < 1:1806856/76‑1 (MQ=255) tcctgatgaCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:1599689/73‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGGGGGGAAAAACCCCATAAGCGCTAACTTa > 2:2106511/1‑76 (MQ=255) gTGATGCCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTaa < 1:954898/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGGGGGGAAAAACCCCATAAGCGCTAACTTAAg < 1:834540/76‑1 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAggg > 2:201228/1‑76 (MQ=255) gaCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:883111/76‑1 (MQ=255) gaCCGGTTTATCCCCGCCGGCGC‑GGGGAACACCCTGAACGGAGGGGAAAAATCCCATAAGCGCTAACTTAAGGGtt > 2:2180583/1‑76 (MQ=37) aCCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGtg > 2:1900505/1‑76 (MQ=255) ccGGTTTATCCCCGCCTGCGC‑GGGGGACACCCTGAACCGCGGGGAAAAAACCCATAAGCGCTAACCTAAAGGgtgt > 2:1976783/1‑76 (MQ=21) cGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtgtg > 1:686525/1‑76 (MQ=255) cGGTTTATCCCCCCCGGCGC‑GGGGGACACCCCGAACGGGGGGGGAAAAACCCCCAAGCGGTAACTTAAGGGGtggg > 2:1271837/1‑74 (MQ=16) ggTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTgg < 2:1151817/76‑1 (MQ=255) gTTTACCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:1211964/76‑1 (MQ=255) tttATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 1:977002/76‑1 (MQ=255) tttATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 1:1595895/76‑1 (MQ=255) ttATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGNGCTAACTTAAGGGTTGTGGTAt < 2:300457/76‑1 (MQ=255) ttATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:315322/76‑1 (MQ=255) tATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:1278177/1‑76 (MQ=255) tATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:2174595/1‑76 (MQ=255) ccccccGCGGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:1051060/74‑1 (MQ=255) aTCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 2:682552/76‑1 (MQ=255) aTCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 2:1304863/76‑1 (MQ=255) tCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 2:415473/76‑1 (MQ=255) ccccGTTGGGGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 1:657923/76‑1 (MQ=255) ccccGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg > 2:1925724/1‑76 (MQ=255) cccGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc > 2:2142924/1‑76 (MQ=255) ccGCGGGCGG‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc < 1:1262901/76‑1 (MQ=255) cGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt > 1:830972/1‑76 (MQ=255) gCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 2:1658396/76‑1 (MQ=255) cTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa < 1:1394521/76‑1 (MQ=255) ggCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata > 1:785005/1‑76 (MQ=255) gcgc‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGatat < 2:1938076/76‑1 (MQ=255) cgc‑gGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:264349/76‑1 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt < 1:1858321/76‑1 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:904698/76‑1 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 2:540920/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 2:1778290/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:1175456/76‑1 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa > 2:421157/1‑76 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg < 2:460795/76‑1 (MQ=255) tGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa < 1:229875/76‑1 (MQ=255) tGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa > 1:2019627/1‑76 (MQ=255) tGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa > 2:1578134/1‑76 (MQ=255) gAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:1704312/76‑1 (MQ=255) gAACAGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt > 1:1389250/1‑76 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 1:2131977/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 2:693430/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATAATTTAACGTGCCGATGaa < 1:474659/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:386396/76‑1 (MQ=255) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc > 2:1383973/1‑76 (MQ=39) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc > 1:343251/1‑76 (MQ=39) ggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc < 2:1542317/76‑1 (MQ=35) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc < 1:1068153/76‑1 (MQ=32) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc < 1:609134/76‑1 (MQ=32) | CGAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772780‑2772923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |