| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,875,625 | 1 | . | T | 98.6% | 279.0 / ‑3.4 | 70 | intergenic (‑59/+294) | glmU/atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (37/32); total (38/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CA‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695 | tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CA‑t > 2:813112/1‑76 (MQ=255)tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CA‑t > 1:279285/1‑76 (MQ=255)tAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CA‑t < 1:1580027/76‑1 (MQ=255) attCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CA‑tttttttt > 2:1789456/1‑75 (MQ=255) cATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGt < 1:2062349/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGTAAAAACTA‑CATTTTTTTTCATCGTg > 1:2130896/1‑76 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTg < 2:1802548/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTg < 1:57479/76‑1 (MQ=255) aTACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTg < 2:1812677/76‑1 (MQ=255) aaCGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGa < 2:1512287/75‑1 (MQ=255) cgcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGaaa > 2:536832/1‑76 (MQ=255) gcgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAAt < 1:1584818/76‑1 (MQ=255) cgTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATg > 1:299916/1‑76 (MQ=255) gTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATgg < 1:425890/76‑1 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATgta > 1:1870220/1‑74 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGa > 1:569616/1‑76 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGa > 1:569633/1‑76 (MQ=255) tCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGa < 1:802314/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGAc > 1:533485/1‑76 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGAc < 1:1575426/76‑1 (MQ=255) ccTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGAc < 1:1880262/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACag < 2:886648/76‑1 (MQ=255) tGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACag < 1:1115023/76‑1 (MQ=255) aCTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACagag > 1:957182/1‑76 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGAt < 1:1706358/76‑1 (MQ=255) gTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGAt < 2:361325/76‑1 (MQ=255) tAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATa < 1:1287699/76‑1 (MQ=255) aaTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATaa < 1:1432097/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATaaa < 1:813112/76‑1 (MQ=255) aTTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATaaa > 1:2193781/1‑76 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAAtt < 2:434195/76‑1 (MQ=255) ttGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAAtt > 1:1202020/1‑76 (MQ=255) tGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTg > 2:1097174/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 2:2517/1‑76 (MQ=255) gagaACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGt > 2:1285551/1‑76 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:1901370/76‑1 (MQ=255) aCGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCaa < 2:835722/76‑1 (MQ=255) gAATTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATa > 1:1033542/1‑76 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa < 2:490851/76‑1 (MQ=255) aaTTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATaa > 2:1268569/1‑76 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc > 1:1532511/1‑76 (MQ=255) aTTTAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAAc < 1:1773381/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg < 2:16549/76‑1 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:2005409/1‑76 (MQ=255) tttAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACg > 1:827859/1‑76 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg < 1:1906734/76‑1 (MQ=255) ttAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACgg > 1:380340/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:1312222/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa > 2:333501/1‑76 (MQ=255) tAAACCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGa < 1:121923/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTACCT‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:6029/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa < 1:1403780/67‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCa > 2:1403780/1‑67 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:1602970/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 2:254935/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt < 1:1602955/76‑1 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:249815/1‑76 (MQ=255) aaaCCGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGAt > 1:249786/1‑76 (MQ=255) ccGCTTCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTAt < 2:1514325/76‑1 (MQ=255) ttCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:1069945/1‑76 (MQ=255) ttCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 1:1032425/1‑76 (MQ=255) ttCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATcccc > 2:1913319/1‑76 (MQ=255) tCACCTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCg > 1:786776/1‑76 (MQ=255) cTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 2:339293/76‑1 (MQ=255) cTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa < 1:1411333/76‑1 (MQ=255) cTTGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGa > 1:625728/1‑76 (MQ=255) tGAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACg > 1:5790/1‑76 (MQ=255) gAAAAAACTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGa < 1:1526849/76‑1 (MQ=255) aaaaaCTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:512749/1‑76 (MQ=255) aaaaaCTA‑CATTTTTTTTCATAGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGaaa > 2:434576/1‑76 (MQ=255) aaaaCTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAg > 1:1930807/1‑76 (MQ=255) aaaCTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 1:473295/1‑76 (MQ=255) aaaCTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAgc > 2:13662/1‑76 (MQ=255) cTA‑CATTTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGcc > 1:234668/1‑76 (MQ=255) | TAGCATTATTCAACATACGCGTCCTGACTGTAATTTGAGAACGAATTTAAACCGCTTCACCTTGAAAAAACTA‑CA‑TTTTTTTCATCGTGAAATGGACAGAGGATAAATTGTTCAATAACGGATTATCCCCGCTGACGAAAGCGCC > REL606/3875551‑3875695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |