| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 2,816,986 | A→T | intergenic (+385/‑172) | ygdH → / → sdaC | hypothetical protein/predicted serine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,816,986 | 0 | A | T | 97.5% | 306.7 / ‑0.5 | 79 | intergenic (+385/‑172) | ygdH/sdaC | hypothetical protein/predicted serine transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base T (34/43); total (34/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 | |||||||||||
ATTCTCTTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTA > REL606/2816912‑2817058 | aTTCTCTTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGAt < 2:1110886/76‑1 (MQ=255) ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa < 1:727048/76‑1 (MQ=255) ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa > 1:196264/1‑76 (MQ=255) ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa < 1:1695913/76‑1 (MQ=255) ctctTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCaa < 1:1337376/76‑1 (MQ=255) cttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGa > 2:446419/1‑76 (MQ=255) cttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGa > 1:1234623/1‑76 (MQ=255) ttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGAt < 1:1127674/76‑1 (MQ=255) ttttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGAt < 2:1707327/76‑1 (MQ=255) ttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCa > 2:1377513/1‑76 (MQ=255) ttacttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCa < 2:1543473/76‑1 (MQ=255) cttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTg > 1:362368/1‑76 (MQ=255) ttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTga > 2:1959556/1‑76 (MQ=255) ttttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTga > 2:292221/1‑76 (MQ=255) tttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgat > 1:634312/1‑76 (MQ=255) tttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgat < 2:1022685/76‑1 (MQ=255) tttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgat > 1:2246766/1‑76 (MQ=255) ttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgata < 2:1436143/76‑1 (MQ=255) ttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgata < 2:1523393/76‑1 (MQ=255) ttaATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgata > 2:2233364/1‑76 (MQ=255) taATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTgatag > 1:1722402/1‑76 (MQ=255) ttACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATAc < 1:116409/76‑1 (MQ=255) tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACa > 1:1317777/1‑76 (MQ=255) tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACa < 1:666839/76‑1 (MQ=255) aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt < 1:325579/76‑1 (MQ=255) aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt > 1:416729/1‑76 (MQ=255) aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt > 1:517257/1‑76 (MQ=255) aCAGAGGAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACAt < 1:1540175/76‑1 (MQ=255) cAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATa < 2:217928/76‑1 (MQ=255) agagTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATaa < 2:379509/76‑1 (MQ=255) tAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtg > 1:1576353/1‑76 (MQ=255) tAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtg > 2:219876/1‑76 (MQ=255) aaGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtgtg < 2:1115825/76‑1 (MQ=255) aaGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtgtg < 2:927595/76‑1 (MQ=255) aGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTtgtgt > 1:1798426/1‑76 (MQ=255) ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:678263/1‑76 (MQ=255) ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:1569501/1‑76 (MQ=255) ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:1848032/1‑76 (MQ=255) ttGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTAt > 1:571420/1‑76 (MQ=255) gggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCt < 1:839535/76‑1 (MQ=255) ggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCtt < 2:905811/76‑1 (MQ=255) ggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCtt < 1:119762/76‑1 (MQ=255) ggATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCtt < 1:1226928/76‑1 (MQ=255) gATAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCttt < 2:1699162/76‑1 (MQ=255) aTAATCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTc < 2:84493/76‑1 (MQ=255) aaTCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCg < 2:193916/76‑1 (MQ=255) aaTCTATCTTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCg < 2:1461211/76‑1 (MQ=255) ctatctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGccc > 1:2024729/1‑76 (MQ=255) tatctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCt < 1:999971/76‑1 (MQ=255) atctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTc > 1:981404/1‑76 (MQ=255) atctTCCAAGTAGATTATTGTATTTGGGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTc < 1:2091480/76‑1 (MQ=255) tctTCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCa < 1:108326/76‑1 (MQ=255) ttCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCaaa < 2:441264/76‑1 (MQ=255) ttCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCaaa > 2:1403672/1‑76 (MQ=255) tCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat < 2:483263/76‑1 (MQ=255) tCCAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat > 1:36798/1‑76 (MQ=255) ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:1753996/76‑1 (MQ=255) ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:2105383/76‑1 (MQ=255) ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:1640841/76‑1 (MQ=255) ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:2217810/76‑1 (MQ=255) ccAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 2:1068752/76‑1 (MQ=255) cAAGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatta > 1:1181066/1‑76 (MQ=255) aaGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattat > 2:911796/1‑76 (MQ=255) aaGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattat < 1:19117/76‑1 (MQ=255) aGTAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattatt < 2:2198249/76‑1 (MQ=255) tAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAc > 2:2139104/1‑76 (MQ=255) tAGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAc > 2:1050356/1‑76 (MQ=255) aGATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcg < 2:510161/76‑1 (MQ=255) gATTATTGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcgg < 1:301491/76‑1 (MQ=255) ttattGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcggcg > 1:221743/1‑76 (MQ=255) attGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGt > 1:596245/1‑76 (MQ=255) ttGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTa > 1:1351448/1‑76 (MQ=255) ttGTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTa < 2:1502236/76‑1 (MQ=255) gTATTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTaaa > 1:690669/1‑76 (MQ=255) aTTTGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATg > 1:1366276/1‑76 (MQ=255) tttGGGTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGa < 2:1291974/76‑1 (MQ=255) gggTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTa < 2:46499/76‑1 (MQ=255) gggTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTa < 2:491384/76‑1 (MQ=255) gggTTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTa < 1:1307576/76‑1 (MQ=255) | ATTCTCTTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGGGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTA > REL606/2816912‑2817058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |