| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,998 | Δ6,935 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893603–3894996 | 3901932 | 6937–8330 | 24 [22] | [0] 77 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894997 | NA (NA) | 76 (1.200) +GT |
62/146 | 0.0 | 100% | intergenic (+27/‑161) | insK‑5/rbsD | IS150 putative transposase/predicted cytoplasmic sugar‑binding protein |
| ? | REL606 | 3901933 = | 0 (0.000) | coding (487/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894923‑3894997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901933‑3902005 || CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG > 1:1987947/1‑76CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG > 1:1223029/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:1572955/76‑1 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 2:73354/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 2:1022363/1‑76 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 2:1488880/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 1:133852/1‑76 ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTT > 2:352344/1‑76 ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTT < 1:726512/76‑1 ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTT > 2:1664642/1‑76 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTG < 1:1327361/76‑1 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTG < 2:1770844/76‑1 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGC > 2:527954/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCC < 1:409257/76‑1 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCC > 1:962213/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCC < 2:1014944/76‑1 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCA < 2:471600/76‑1 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGG < 1:1425390/76‑1 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGA < 1:1909337/76‑1 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGA < 1:831974/76‑1 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGA < 1:1002589/76‑1 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACC > 2:17985/1‑76 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAG > 1:1648708/1‑76 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGC > 1:127609/1‑76 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGC > 1:1158188/1‑76 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGC < 1:323814/76‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCA < 1:1876874/76‑1 GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCAC < 2:1238148/76‑1 GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCAC < 2:1310778/76‑1 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACG > 2:870192/1‑76 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACG > 2:1768681/1‑76 ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGC < 1:292178/76‑1 TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCC > 2:1179822/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCG > 1:1765865/1‑76 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCA > 2:763923/1‑76 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAA > 1:1852447/1‑76 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAA < 1:1054217/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:294622/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAG > 2:1380446/1‑76 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:731826/76‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGA < 2:1315498/76‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGA > 1:750734/1‑76 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGA > 1:1159489/1‑76 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG < 1:1291179/76‑1 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:1409745/1‑76 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG > 1:1915488/1‑76 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGC < 2:1057072/76‑1 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT < 2:1867725/76‑1 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT > 2:1791860/1‑76 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAA > 1:1042723/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAA < 1:731322/76‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT < 1:571555/76‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 2:156183/1‑76 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 2:1693529/1‑76 TGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC < 2:2019820/76‑1 TGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC < 1:299793/76‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCC < 2:2057527/76‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGCGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCC > 2:339642/1‑76 TCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC > 1:1105970/1‑76 TCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC < 2:1415797/76‑1 CCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 1:181369/76‑1 CCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA > 2:1247036/1‑76 CAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCAC < 2:253324/76‑1 AACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACC < 2:1703794/76‑1 AACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACC < 2:1493565/76‑1 ACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCA < 2:211829/76‑1 CTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG < 2:1425755/76‑1 TTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC > 1:702694/1‑76 GGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC > 1:1456019/1‑76 GGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC < 2:1413093/76‑1 GTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT < 2:240721/76‑1 GTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT > 1:698198/1‑76 GTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT < 1:1286804/76‑1 GTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT > 1:297054/1‑76 TCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG > 1:1629277/1‑76 CAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG > 1:139482/1‑76 CAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG < 2:529720/76‑1 AGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGC > 1:1490781/1‑76 ACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC > 1:771624/1‑76 AGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA < 2:325858/76‑1 GGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA < 1:1096859/76‑1 || CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894923‑3894997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901933‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |