New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	4305592 =	73 (1.120)	5 (0.090)	5/132	6.9	7.0%	intergenic (‑144/‑257)	phnA/yjdA	hypothetical protein/conserved protein with nucleoside triphosphate hydrolase domain
	?	REL606	4305616 =	69 (1.210)					intergenic (‑168/‑233)	phnA/yjdA	hypothetical protein/conserved protein with nucleoside triphosphate hydrolase domain
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGGGGTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCTTTCTG  >  REL606/4305542‑4305691                                                                           |                                                                            cGGGGGTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCct                                                                            <  2:818689/76‑1 (MQ=255)   ggggTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCctct                                                                          <  2:339402/76‑1 (MQ=255)   ggggTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCctct                                                                          >  1:1617828/1‑76 (MQ=255)    gggTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCta                                                                         <  2:1875705/76‑1 (MQ=255)    gggTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCta                                                                         <  2:1046070/76‑1 (MQ=255)    gggTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCta                                                                         <  2:361757/76‑1 (MQ=255)     ggTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtat                                                                        >  1:1736709/1‑76 (MQ=255)       tACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtattt                                                                      <  1:1356933/76‑1 (MQ=255)        aCTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtattta                                                                     <  2:1926524/76‑1 (MQ=255)        aCTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtattta                                                                     <  1:212056/76‑1 (MQ=255)        aCTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtattta                                                                     >  2:575810/1‑76 (MQ=255)        aCTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtattta                                                                     <  2:735799/76‑1 (MQ=255)        aCTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtattta                                                                     >  1:1232056/1‑76 (MQ=255)        aCTGCTGAGTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtattta                                                                     <  2:1643256/76‑1 (MQ=255)         ctgctgATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtatttat                                                                    <  1:1192223/76‑1 (MQ=255)          tgctgATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtatttatt                                                                   >  2:134215/1‑76 (MQ=255)          tgctgATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCtatttatt                                                                   <  2:1331051/76‑1 (MQ=255)                 tttAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAg                                                            >  1:1477220/1‑76 (MQ=255)                  ttAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGa                                                           <  1:1471594/76‑1 (MQ=255)                    aGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATa                                                         <  2:843906/76‑1 (MQ=255)                      acgacgATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAAt                                                       <  2:1156906/76‑1 (MQ=255)                        gacgaTCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGt                                                     >  1:1916520/1‑76 (MQ=255)                         acgaTCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGtt                                                    <  1:1837558/76‑1 (MQ=255)                          cgaTCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTa                                                   <  2:193709/76‑1 (MQ=255)                           gaTCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTaa                                                  >  1:1490733/1‑76 (MQ=255)                            aTCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTGAt                                                 >  1:799476/1‑76 (MQ=255)                            aTCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAAt                                                 >  1:799450/1‑76 (MQ=255)                             tCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATg                                                <  1:1312593/76‑1 (MQ=255)                               gTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGct                                              >  2:898900/1‑76 (MQ=255)                               gTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGct                                              >  2:116973/1‑76 (MQ=255)                               gTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGct                                              >  1:1567091/1‑76 (MQ=255)                                 tttCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGctct                                            <  1:721215/76‑1 (MQ=255)                                   tCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTAc                                          >  2:16401/1‑76 (MQ=255)                                   tCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTAc                                          <  1:1167317/76‑1 (MQ=255)                                    cATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACt                                         <  1:1414136/76‑1 (MQ=255)                                     aTTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACtt                                        >  1:766830/1‑76 (MQ=255)                                     aTTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACtt                                        <  2:536233/76‑1 (MQ=255)                                     aTTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACtt                                        <  1:1158068/76‑1 (MQ=255)                                      tttGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTg                                       <  1:1272681/76‑1 (MQ=255)                                      tttGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTg                                       >  1:862701/1‑76 (MQ=255)                                       ttGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGt                                      >  2:1219947/1‑76 (MQ=255)                                        tGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGtt                                     >  1:17614/1‑76 (MQ=255)                                           aaGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCtt                                  >  2:174507/1‑76 (MQ=255)                                           aaGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCtt                                  >  2:1037132/1‑76 (MQ=255)                                           aaGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCtt                                  >  2:814920/1‑76 (MQ=255)                                              gAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCttttt                               >  2:1085682/1‑76 (MQ=255)                                               aaaCGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCtttttt                              >  1:1152749/1‑76 (MQ=255)                                                aaCGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCttttttt                             >  2:566823/1‑76 (MQ=255)                                                aaCGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCttttttt                             <  2:350216/76‑1 (MQ=255)                                                  cGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTaa                           <  1:537519/76‑1 (MQ=255)                                                  cGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTaa                           <  1:45317/76‑1 (MQ=255)                                                  cGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTaa                           <  1:438591/76‑1 (MQ=255)                                                   gCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAAt                          >  2:1984125/1‑76 (MQ=255)                                                    cAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAAtt                         >  1:597716/1‑76 (MQ=255)                                                     aaaaaGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTc                        <  1:1271053/76‑1 (MQ=255)                                                      aaaaGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTca                       <  1:1840149/76‑1 (MQ=255)                                                       aaaGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTcac                      >  2:949572/1‑76 (MQ=255)                                                       aaaGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTcac                      >  2:473081/1‑76 (MQ=255)                                                       aaaGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTcac                      >  2:1941087/1‑76 (MQ=255)                                                       aaaGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTcac                      >  1:988846/1‑76 (MQ=255)                                                        aaGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTcaca                     <  1:138442/76‑1 (MQ=255)                                                          gAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATg                   <  1:1060718/76‑1 (MQ=255)                                                           aaaaTAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGa                  >  2:1947014/1‑76 (MQ=255)                                                            aaaTAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGat                 <  2:1920109/76‑1 (MQ=255)                                                             aataatCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGata                >  1:608998/1‑76 (MQ=255)                                                             aataatCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGata                >  1:135166/1‑76 (MQ=255)                                                              ataatCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGatat               <  2:867509/76‑1 (MQ=255)                                                                aatCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATAttt             >  2:2004203/1‑76 (MQ=255)                                                                aatCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATAttt             >  1:623706/1‑76 (MQ=255)                                                                  tCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATAttttt           >  1:1461649/1‑76 (MQ=255)                                                                   cTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTa          >  2:1771400/1‑76 (MQ=255)                                                                    tttttGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTAt         <  1:1186824/76‑1 (MQ=255)                                                                      tttGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCt       <  1:817698/76‑1 (MQ=255)                                                                      tttGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCt       >  1:1260265/1‑76 (MQ=255)                                                                       ttGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCtt      >  2:1159401/1‑76 (MQ=255)                                                                        tGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCttt     >  2:770773/1‑76 (MQ=255)                                                                        tGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCttt     >  1:928420/1‑76 (MQ=255)                                                                        tGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCttt     >  2:363754/1‑76 (MQ=255)                                                                           ctctATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCTTTCTg  >  1:1403945/1‑76 (MQ=255)                                                                           |                                                                            CGGGGGTACTGCTGATTTTAGACGACGATCGTTTTCATTTGAAAGGAAACGCAAAAAGAAAATAATCTTTTTGCCTCTATTTATTATTTAAGATAATGTTAATGCTCTACTTGTTCTTTTTTTAATTCACATGATATTTTTATCTTTCTG  >  REL606/4305542‑4305691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.