| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893613–3894994 | 3901930 | 6937–8318 | 25 [21] | [0] 86 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 81 (1.230) | 51/146 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAGCTTTTTGGGGTCAGTAC < 2:233562/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:1064504/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:79815/1‑76GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:368612/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:313954/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:311010/1‑76GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:996539/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGGCCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:74709/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1716031/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:2130764/1‑76 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:1577668/1‑76 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1848719/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1480913/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1434121/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:1720823/76‑1 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 2:1603525/76‑1 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 2:2037122/76‑1 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 2:1731001/76‑1 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 2:2099084/76‑1 CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 2:1569970/76‑1 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:1664821/1‑76 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 1:785400/1‑76 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 1:469764/76‑1 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 1:1861952/1‑76 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 1:1529655/1‑76 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG < 1:8686/76‑1 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAG > 1:1057972/1‑76 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT > 1:1556125/1‑76 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:912877/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:1420858/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 2:341359/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG > 1:696234/1‑76 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:512569/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 1:674631/76‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 1:1801203/76‑1 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA < 2:1904097/76‑1 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG < 2:1268037/76‑1 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG > 1:1766536/1‑76 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 2:1619552/76‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC > 2:90044/1‑76 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC > 1:124966/1‑76 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC > 1:1412437/1‑76 GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACG > 1:390067/1‑76 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 2:890534/1‑76 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 1:193451/1‑76 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 2:1537970/1‑76 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC < 2:1480085/76‑1 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGCGACCAGCACGC > 1:1408287/1‑76 TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG < 1:1614123/76‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 1:1140492/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 1:1818718/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 1:2020404/1‑76 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 2:1577668/76‑1 ccCCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 2:1031392/74‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 2:81785/76‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 2:1186085/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGA < 2:1924749/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGA > 2:1656223/1‑76 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGA > 1:1936886/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 2:429180/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC > 2:115480/1‑76 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG < 1:1184270/76‑1 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGG < 2:1181297/76‑1 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGC < 2:340945/76‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCC > 1:1625548/1‑76 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAA < 1:730305/76‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAA < 1:515071/76‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 2:2066719/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 1:39515/1‑76 TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 1:899956/1‑76 TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 1:745972/1‑76 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGG > 2:471101/1‑76 ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGC < 2:653743/76‑1 CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC > 2:1123657/1‑76 CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC > 2:1242218/1‑76 CTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC < 1:2054382/76‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC > 1:803519/1‑76 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC > 1:1240083/1‑76 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCA < 2:1340472/76‑1 TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAC < 2:672082/76‑1 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG > 1:608787/1‑76 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG < 1:712164/76‑1 TTGGGGTCACTACAGTTCCCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG < 1:1658755/76‑1 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGG < 2:1319318/76‑1 GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC < 1:2119005/76‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG > 1:1177967/1‑76 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 2:1283315/76‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG < 2:498992/76‑1 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG < 2:1978978/76‑1 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG > 1:444824/1‑76 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG > 1:996973/1‑76 GTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGA > 1:302609/1‑76 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC > 1:1284902/1‑76 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC < 2:1016017/76‑1 ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA > 1:908382/1‑76 ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA > 2:1766250/1‑76 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA < 2:1139419/76‑1 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA < 2:184399/76‑1 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > 1:1159921/1‑76 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA < 1:670743/76‑1 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |