New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3651091 =	NA (NA)	57 (1.100)	43/144	0.2	NA	noncoding (1/1443 nt)	IS150	repeat region
	?	REL606	3907731 =	NA (NA)					noncoding (2230/2906 nt)	rrlC	23S ribosomal RNA

GCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3651168‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCT  >  REL606/3907731‑3907805                                                                                                                                                           GCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTA                                                                               <  2:1718647/76‑1  CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC                                                                              <  1:307381/76‑1  CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC                                                                              >  2:675062/1‑76  CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC                                                                              <  1:816091/76‑1  CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC                                                                              <  2:1328820/76‑1  CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC                                                                              <  2:1364173/76‑1  CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC                                                                              <  2:1711501/76‑1   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             >  1:26013/1‑76   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             <  1:391855/76‑1   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             <  2:1002068/76‑1   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             <  1:1597630/76‑1   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             <  2:377486/76‑1   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             >  2:572818/1‑76   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             <  2:644617/76‑1   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA                                                                             >  2:970426/1‑76    TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                                            <  2:564575/76‑1    TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                                            >  2:1306356/1‑76    TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                                            >  1:1197824/1‑76     TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                                                           >  2:420384/1‑76     TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGT                                                                           <  1:391787/76‑1      TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTG                                                                          >  1:1169588/1‑76       CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGT                                                                         >  1:1080964/1‑76             GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTG                                                                   <  1:218899/76‑1                 TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTA                                                               <  1:1451991/76‑1                  TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAG                                                              >  1:479560/1‑76                  TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAG                                                              >  1:279505/1‑76                  TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAG                                                              >  1:241476/1‑76                  TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGGGGGTAG                                                              >  2:571739/1‑76                   TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGT                                                             >  1:1056221/1‑76                   TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGT                                                             <  1:766104/76‑1                    TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTT                                                            >  2:1708325/1‑76                     GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTT                                                           >  1:334240/1‑76                     GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTT                                                           <  1:158739/76‑1                     GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTT                                                           <  2:1667570/76‑1                         TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACT                                                       <  2:959572/76‑1                         TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACT                                                       >  1:1404150/1‑76                           GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGG                                                     >  1:1412508/1‑76                           GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGG                                                     <  1:1622421/76‑1                            ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGG                                                    <  1:396147/76‑1                              ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGC                                                  >  2:906020/1‑76                                  TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTC                                              >  1:147905/1‑76                                   AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT                                             >  1:1185595/1‑76                                   AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGGCT                                             >  1:686575/1‑76                                    GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTC                                            >  2:365469/1‑76                                        CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCC                                        >  2:1641849/1‑76                                        CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCC                                        >  1:288989/1‑76                                         TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCT                                       <  2:802490/76‑1                                          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTGTCCTCCca                                      >  1:417953/1‑74                                          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTA                                      >  2:1655690/1‑76                                            TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAA                                    >  1:286172/1‑76                                               ATTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAG                                 <  2:5861/76‑1                                                TTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGg                                >  2:315626/1‑75                                                TTTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGT                                <  1:1515443/76‑1                                                 TTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTA                               <  1:1471568/76‑1                                                 TTCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTA                               >  2:519468/1‑76                                                  TCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTCAAGAGTAA                              >  1:1342177/1‑76                                                  TCATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAA                              <  1:151545/76‑1                                                    ATCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACG                            <  1:1294296/76‑1                                                     TCGTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGG                           <  2:1167505/76‑1                                                       GTCCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAG                         <  2:282933/76‑1                                                         CCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGA                       <  2:147905/76‑1                                                         CCAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGA                       >  2:1654241/1‑76                                                          CAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTCAAAAGCAAAGGAGGgg                      >  1:406822/1‑74                                                          CAACAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG                      >  2:1580700/1‑76                                                             CAAAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCAC                   <  2:687524/76‑1                                                               AAATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGA                 <  2:1022555/76‑1                                                                AATGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGCCTCCCCCTAAAGAGTAACGGAGGAGCACGAc                >  2:1553132/1‑75                                                                  TGGGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCTAAGAGGAAGGGGGGGGGACGAAGG              >  2:1095923/1‑76                                                                    GGTGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTT            <  2:1246698/76‑1                                                                      TGCAGTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAAAGGAGGAGCACGAAGGGTGG          >  2:555434/1‑76                                                                          GTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAA      <  2:455422/76‑1                                                                          GTACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAA      <  2:939858/76‑1                                                                            ACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATC    <  1:537103/76‑1                                                                            ACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATC    <  2:1522396/76‑1                                                                             CAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCC   <  1:1656449/76‑1                                                                              AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCT  <  2:918945/76‑1                                                                              AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGGTGGCTAATCCT  >  1:1645420/1‑76                                                                              AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGGAACGGAGGAGCACGAAGGGTGGCTAATCCT  >  1:301521/1‑76                                                                                                                                                           GCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3651168‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCT  >  REL606/3907731‑3907805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.