| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 75 (1.410) | 55/148 | 0.0 | NA | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 3907733 | NA (NA) | noncoding (2232/2906 nt) | rrlC | 23S ribosomal RNA | |||||
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894922‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCTCC < REL606/3907733‑3907659 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 2:1445216/1‑76TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 2:1065441/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACAC < 1:1084897/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACT < 2:517654/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACT > 1:1442040/1‑76 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACT > 1:270107/1‑76 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGT < 2:1342359/76‑1 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCC > 2:571903/1‑76 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCC > 1:860508/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCG < 2:512658/76‑1 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGC > 1:686013/1‑76 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGC < 1:475827/76‑1 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAA < 2:913066/76‑1 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAA < 1:691265/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAAC > 1:1379626/1‑76 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCG < 2:705011/76‑1 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGA < 1:1188302/76‑1 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGA < 1:514411/76‑1 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGAT < 2:1521659/76‑1 CGGAATCAGAGCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATC < 2:154791/76‑1 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATC < 1:337378/76‑1 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATC < 2:171758/76‑1 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGG < 2:1305878/76‑1 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGG < 1:793755/76‑1 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGC > 1:306423/1‑76 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCA > 1:1130507/1‑76 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCA < 1:994748/76‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAA < 2:1492287/76‑1 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAAC < 2:1047301/76‑1 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCAAAC > 1:416535/1‑76 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACG < 1:746068/76‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGT > 2:1230939/1‑76 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGT > 1:398445/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCGAACGTT < 2:1390214/76‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTT < 2:438999/76‑1 TATGCCTCGTTTTTAACTGTCCATCTTTTTGGGGTCAGTACCCCCTGCCCGCACCCCCGATCAGGGGCCAACGTTA < 2:61614/76‑1 TGCCTCGTGTTTACCTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGA < 2:651750/76‑1 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGA > 1:1539303/1‑76 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAA < 2:582393/76‑1 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAAC < 2:683052/76‑1 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAAC > 1:1720074/1‑76 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATC > 1:1032525/1‑76 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATC > 2:477592/1‑76 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATC > 2:1404743/1‑76 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGCACACACTGTCCGCAACCCCGATCAGGGGCCAACGTCACAACTTC > 2:843718/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAATATCAAAC < 1:1612349/76‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACA < 1:335722/76‑1 TAACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACAT > 1:453760/1‑76 AACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATT < 1:755437/76‑1 AACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATT > 1:796999/1‑76 ACTGTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTA < 1:292287/76‑1 TGTCCAGTTTTTTGGGGTCAGTACCCACTGTCCGCACCCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAA < 1:842803/76‑1 GTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAG > 1:135104/1‑76 GTCCAACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAG > 2:248397/1‑76 TCCAACTTTTTGGGGTCAGTACACACTTTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGG < 1:416169/76‑1 AACTTTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTG < 2:1327217/76‑1 TTTTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTAT > 1:437500/1‑76 TTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTT < 2:1439971/76‑1 TTGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTT < 2:38398/76‑1 TGGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTC > 2:549423/1‑76 GGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCA > 2:1040970/1‑76 GGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCA > 2:65808/1‑76 GGGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCA < 2:1200244/76‑1 GGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTCTTTCAA > 1:1651548/1‑76 GGGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAA < 1:1337956/76‑1 GGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAG < 2:877814/76‑1 GGTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAG < 2:2277/76‑1 GTCAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGG < 1:1490797/76‑1 CAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCC > 2:957357/1‑76 CAGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCC > 2:1147532/1‑76 AGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCG > 2:365069/1‑76 AGTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCG < 1:1503736/76‑1 GTACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGG > 2:592842/1‑76 ACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCT > 2:1481198/1‑76 ACACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCT > 1:1246293/1‑76 ACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCTCC > 2:525523/1‑76 ACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCTCC > 2:793694/1‑76 ACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCTCC > 1:111013/1‑76 ACACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCTCC < 1:1606564/76‑1 ACACTGGCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCTCC < 2:831174/76‑1 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894922‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCACTGTCCGCAACCCCGATCAGGGGCCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGCCGGCTCC < REL606/3907733‑3907659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |