| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 581878 = | 50 (0.930) | 3 (0.060) | 3/134 | 6.4 | 7.0% | coding (2262/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | REL606 | = 3625423 | 35 (0.730) | pseudogene (40/738 nt) | yhjQ | b3534; cell division protein (chromosome partitioning ATPase) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAG > REL606/581807‑581952 | gAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATgg > 2:1062735/1‑76 (MQ=255) aaaGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTg < 2:627346/76‑1 (MQ=255) aaaGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTg < 1:1375400/76‑1 (MQ=255) aaaGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTg > 1:271687/1‑76 (MQ=255) aaGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGGTgg > 2:324645/1‑76 (MQ=255) gCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCg < 2:652100/76‑1 (MQ=255) cGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGaa < 1:322577/76‑1 (MQ=255) cACGTTACGGTATGACGGTGGCGGATGTGCAGCTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGGTGGCGAAAc > 2:539454/1‑76 (MQ=255) cGTTGCGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACgg < 2:1418876/76‑1 (MQ=255) tACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTgg < 1:1012836/76‑1 (MQ=255) aCGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGa < 2:954038/76‑1 (MQ=255) ggTATGACGGTGGCGGATGTGCAGTTGTTTGTGGCTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAg < 1:1698739/76‑1 (MQ=255) gTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGTGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAgg < 1:449627/76‑1 (MQ=255) gTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAgg < 1:727035/76‑1 (MQ=255) aCGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTg < 1:1386126/76‑1 (MQ=255) cGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGc > 2:683126/1‑76 (MQ=255) gTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGccc < 2:996995/76‑1 (MQ=255) tGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCg > 1:863942/1‑76 (MQ=255) tGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCg > 2:659777/1‑76 (MQ=255) gCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGtt < 2:65863/76‑1 (MQ=255) gCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGtt > 2:1032042/1‑76 (MQ=255) ggATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGACACGGTGGAAGGGATTGCCCGCTAt > 2:437242/1‑76 (MQ=255) ggATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTAt > 2:437223/1‑76 (MQ=255) ggATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTAt > 1:1508374/1‑76 (MQ=255) gATGTGCAGTTGTTTGTGACTTCTGCTGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATc > 1:113113/1‑76 (MQ=255) aTGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGGGGAAGGGATTGCCCGATATcg > 1:1264565/1‑75 (MQ=255) gtgCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCaa < 1:1592510/76‑1 (MQ=255) gCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAAtt > 1:1025564/1‑76 (MQ=255) aGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTaa < 2:1346355/76‑1 (MQ=255) ttgtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATc < 1:1601905/76‑1 (MQ=255) tgtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCt < 1:1311109/76‑1 (MQ=255) gtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTg < 1:119343/76‑1 (MQ=255) gtttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTg < 1:492776/76‑1 (MQ=255) tttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGc > 1:349387/1‑76 (MQ=255) tgACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTa > 2:425334/1‑76 (MQ=255) cTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATcc > 1:886436/1‑76 (MQ=255) ttCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCg < 1:690579/76‑1 (MQ=255) tCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGc > 2:797683/1‑76 (MQ=255) tCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGc > 1:1582442/1‑76 (MQ=255) tCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGc > 1:687785/1‑76 (MQ=255) tCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGc < 2:620495/76‑1 (MQ=255) gCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCaaa > 2:1520312/1‑76 (MQ=255) gTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCt > 1:63118/1‑76 (MQ=255) tGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTg < 2:1511857/76‑1 (MQ=255) tGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTg < 2:138322/76‑1 (MQ=255) ggcggggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGgc < 1:1262777/76‑1 (MQ=255) ggcggggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGgc < 1:605943/76‑1 (MQ=255) ggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGAt > 2:624247/1‑76 (MQ=255) gcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATa < 2:1511778/76‑1 (MQ=255) cgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAg > 1:1287071/1‑76 (MQ=255) | GAAAAAGCCGCACGTTACGGTATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAG > REL606/581807‑581952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |