| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 62 (1.200) | 50/144 | 0.1 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 53 (1.030) | 42/144 | 0.2 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTACTCTCA > REL606/2772781‑2772924 | gAAATTTTGATTCATCGTGATGACCGGTTTACCCCCGCGGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAAcccc < 1:221908/76‑1 (MQ=255) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCAt < 1:519900/76‑1 (MQ=255) ttttGATTCATCGTGATGGCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATaa < 1:1572156/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATaa < 2:676911/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATaa < 2:1464923/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAg > 2:1587507/1‑76 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAgcg < 1:1386152/76‑1 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAgcg < 2:546723/76‑1 (MQ=255) aTTCATCGTGATGCCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCt < 1:436097/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCt < 1:64305/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCt < 1:384190/76‑1 (MQ=255) ttCATGGTGATGCCCGGTTTACCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 1:669751/76‑1 (MQ=37) cATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAAc < 1:184607/76‑1 (MQ=255) tCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 2:983681/76‑1 (MQ=255) cGTGATGCCCGGTTTACCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:516171/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAg > 2:1125597/1‑76 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAggg < 1:1233750/76‑1 (MQ=255) tgaCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGt < 2:662288/76‑1 (MQ=255) aCCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtg < 1:1120838/76‑1 (MQ=255) ccGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtgt < 2:583803/76‑1 (MQ=255) ttATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 2:1704442/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:1469031/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:1466651/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGAGGGGAAAAACCCCATAAGCGCGAACTTAAGGGTTGTGGTAtt > 2:32024/1‑76 (MQ=255) acccccGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:634508/74‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGAGGGGAAAAAACCCATAAGCGCTTACTTAAGGGCTGCGGTATTa > 2:611927/1‑76 (MQ=37) ccccGCTGGCGCGGGGGAAA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGCTGTGGTATTatg > 2:10461/1‑74 (MQ=25) ccccGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 1:444842/76‑1 (MQ=255) ccccGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 1:1326442/76‑1 (MQ=255) ccGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGcc > 2:698026/1‑76 (MQ=255) gCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 1:1135781/76‑1 (MQ=255) gggCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat < 1:764547/75‑1 (MQ=255) ggCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata > 2:495938/1‑76 (MQ=255) ggCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata > 2:1477901/1‑76 (MQ=255) ggCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata > 2:1187867/1‑76 (MQ=255) cgcgGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:1571732/76‑1 (MQ=255) cgcgGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 2:254780/76‑1 (MQ=255) ggggggAACCCCCCTGAA‑GGGGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 1:554484/74‑1 (MQ=14) ggggAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt < 2:1193417/76‑1 (MQ=255) gggAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:1524033/76‑1 (MQ=255) ggAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑a < 2:1593986/76‑1 (MQ=255) ggAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑a < 2:1521695/76‑1 (MQ=255) gAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑aa < 1:429531/76‑1 (MQ=255) aaCA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AAc < 1:1039217/76‑1 (MQ=255) aaCA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AAc > 1:168028/1‑76 (MQ=255) a‑cCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTg < 2:1699665/76‑1 (MQ=255) a‑cCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTg > 1:811952/1‑76 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCg < 2:790211/76‑1 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCg > 2:513886/1‑76 (MQ=255) tGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGa < 1:1587509/76‑1 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATg > 2:1004766/1‑76 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATg < 2:574995/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGaa < 2:377319/76‑1 (MQ=255) cGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGaa > 2:1068447/1‑76 (MQ=255) ggTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAAt > 2:510861/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AGCGTGCCGATGANtt < 2:1217052/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTACTTTAAGGGTTGGGGATTTACGCTTG‑TTTGATTTAAACGTCCCG‑TGAATTAc > 2:21362/1‑76 (MQ=9) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTa > 1:1543414/1‑76 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTa < 2:1201119/76‑1 (MQ=40) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTAc > 1:722440/1‑76 (MQ=39) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTActct > 2:365752/1‑76 (MQ=34) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTACtctc < 2:1092784/76‑1 (MQ=32) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTACTCTCa < 1:574575/76‑1 (MQ=31) | GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACA‑CCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT‑AACGTGCCGATGAATTACTCTCA > REL606/2772781‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |