New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2806881 =	67 (1.070)	4 (0.110) +TAGAGCGTAACTGCAATGAATTGTGCCCAT	4/90	5.1	8.8%	intergenic (+140/+93)	barA/gudD	hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1
	?	REL606	2898279 =	72 (1.150)					intergenic (+131/+90)	yqeA/yqeB	predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACGCTTATCAGGCCTACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2806900‑2806881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAGGCCTGATAAGCGTA  >  REL606/2898279‑2898298                     ||||||||||||||||||||||||||||||                     TACGCTTATCAGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTA  <  1:1504802/70‑1 TACGCTTATCAGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTGATAAGCGTA  >  2:1504802/1‑70          CAGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTG           <  1:543610/52‑1          CAGGCCTACATTAGAGCGTAACTGCAATGAATTGTGCCCATTTGTAGGCCTG           >  2:543610/1‑52                     ||||||||||||||||||||||||||||||                     TACGCTTATCAGGCCTACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2806900‑2806881 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAGGCCTGATAAGCGTA  >  REL606/2898279‑2898298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.