| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2840545 | 111 (1.770) | 4 (0.110) +TAGAGCGTAACTGCAATGAATTGTGCCCAT |
4/90 | 5.1 | 6.4% | intergenic (‑84/+155) | ygdL/mltA | hypothetical protein/membrane‑bound lytic murein transglycosylase A |
| ? | REL606 | = 3529112 | 85 (1.360) | intergenic (+71/+128) | yhhK/livJ | hypothetical protein/leucine/isoleucine/valine transporter subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTAATCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGC > REL606/3529037‑3529187 | gTTAATCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACaa < 2:1931724/76‑1 (MQ=255) ttAATCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAAt < 1:941957/76‑1 (MQ=255) ttAATCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAAt < 1:1778381/76‑1 (MQ=255) tAATCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAAtg > 1:479706/1‑76 (MQ=255) aTCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAAtgtg > 1:2443/1‑76 (MQ=255) tCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAAtgtgt > 2:666489/1‑76 (MQ=255) tCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAAtgtgt < 2:1961005/76‑1 (MQ=255) gTCAAGTTGATTTCAAAAGTGATGACCAACGAGGAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATgtgtgt < 2:132469/76‑1 (MQ=255) cAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTg < 2:120012/76‑1 (MQ=255) aaGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGc < 1:1067990/76‑1 (MQ=255) aGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCa < 1:127390/76‑1 (MQ=255) tGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAAtt < 2:31799/76‑1 (MQ=255) tGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAAtt > 2:1767332/1‑76 (MQ=255) gATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAAttt > 2:1075740/1‑76 (MQ=255) ttCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACt > 1:567943/1‑76 (MQ=255) ttCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACt < 2:1375597/76‑1 (MQ=255) cAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGa > 2:476016/1‑76 (MQ=255) aaaaGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGAt > 2:356660/1‑76 (MQ=255) aaaaGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGAt > 2:1544700/1‑76 (MQ=255) aaaGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGAtt < 1:813402/76‑1 (MQ=255) aaGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGAttt > 1:1892375/1‑76 (MQ=255) aaGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGAttt > 1:581343/1‑76 (MQ=255) tgatgaCCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCtt > 1:674748/1‑76 (MQ=255) gatgaCCAACGAGAAATTGCCTGATGCACTCCGCTTATCAGGCCTACAATGTGTGTTGCAATTTAGTGATTTCttt > 2:1690852/1‑76 (MQ=25) atgaCCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTg > 2:668199/1‑76 (MQ=255) atgaCCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTg > 2:1898485/1‑76 (MQ=255) gaCCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGa < 2:1319650/76‑1 (MQ=255) gaCCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGa > 1:639157/1‑76 (MQ=255) gaCCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGa > 1:1864041/1‑76 (MQ=255) aCCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTgggt > 2:704870/1‑74 (MQ=255) ccAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATc > 2:948482/1‑76 (MQ=255) cAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCt > 2:560870/1‑76 (MQ=255) cAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCt > 2:1590581/1‑76 (MQ=255) cAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCt > 2:591941/1‑76 (MQ=255) cAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCt > 2:1058994/1‑76 (MQ=255) aCGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACCGATTTCTTTGGATCTTg > 1:1563457/1‑76 (MQ=255) cGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGt > 2:1025140/1‑76 (MQ=255) cGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGt > 2:884870/1‑76 (MQ=255) cGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGt > 2:575873/1‑76 (MQ=255) gagaAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTa > 2:570414/1‑76 (MQ=255) gagaAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTa > 2:1288155/1‑76 (MQ=255) gagaAATTGCCTGATGCGCGACGCCTATCCGGCCTACAATGTGTGTTGCCATTTACTGATTTCTTTGGATCTTGTa > 2:736558/1‑76 (MQ=37) agaAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAg < 1:409679/76‑1 (MQ=255) agaAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAg > 2:394257/1‑76 (MQ=255) agaAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAg > 2:1239511/1‑76 (MQ=255) agaAATTGCCTGATGCGCTACGCCTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAg > 2:568472/1‑76 (MQ=255) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAgga < 2:1807231/76‑2 (MQ=255) aaTTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGcc > 2:556729/1‑76 (MQ=255) ttGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCgg > 2:771011/1‑76 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTTTTTGGTTCTTGTAGGCCgggt > 1:897081/1‑74 (MQ=25) tGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAg < 2:1905367/76‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGc > 2:1131781/1‑76 (MQ=255) tGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCg < 1:1212052/76‑1 (MQ=255) cgcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGtt < 1:1411306/76‑1 (MQ=255) cgcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGtt > 1:913263/1‑76 (MQ=255) cgcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGtt < 1:898591/76‑1 (MQ=255) gcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGttt < 1:46267/76‑1 (MQ=255) gcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGttt < 1:153763/76‑1 (MQ=255) gcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGttt < 1:378542/76‑1 (MQ=255) tACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAc > 2:516159/1‑76 (MQ=255) tACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAc > 1:107009/1‑76 (MQ=255) aCGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcg > 1:947513/1‑76 (MQ=255) aCGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcg > 1:453912/1‑76 (MQ=255) aCGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcg < 1:1195239/76‑1 (MQ=255) cGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcgc > 1:1794653/1‑76 (MQ=255) cGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcgc > 2:1477614/1‑76 (MQ=255) cGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcgc > 1:450844/1‑76 (MQ=255) cTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcgccg > 1:1734026/1‑76 (MQ=255) aTCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCAt < 2:909576/76‑1 (MQ=255) cAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATcc < 1:1890850/76‑1 (MQ=255) ggCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg > 2:1898305/1‑76 (MQ=255) ggCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg < 2:1458299/76‑1 (MQ=255) gCCTACAATGTGTGTTGCAATTTACTGATTTTTTTGGATCTTGTAGGCCGGATAGGGCGTTTCCGCCGCATCGGGc < 2:1044396/76‑1 (MQ=25) gCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc > 1:592230/1‑76 (MQ=255) gCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 2:82507/76‑1 (MQ=255) tACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATg < 2:676501/76‑1 (MQ=255) tACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATg < 2:1014508/76‑1 (MQ=255) tACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATg > 1:25847/1‑76 (MQ=255) aCAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGa > 1:526570/1‑76 (MQ=255) aCAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGa < 2:2443/76‑1 (MQ=255) cAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGaa < 2:675753/76‑1 (MQ=255) cAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGaa < 2:734810/76‑1 (MQ=255) cAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGaa > 1:365971/1‑76 (MQ=255) aTGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGGGTTTACGCCGCATCCGGCATGAAGc < 2:1684373/76‑1 (MQ=255) aTGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGc > 1:226073/1‑76 (MQ=255) aTGTGCGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGc > 2:1077955/1‑76 (MQ=255) | GTTAATCGTCAAGTTGATTTCAAAAGTGATGACCAACGAGAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGC > REL606/3529037‑3529187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |