| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 79 (1.310) | 58/144 | 0.0 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 62 (1.030) | 46/144 | 0.2 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772782‑2772923 | aaaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCa < 2:347782/76‑1 (MQ=255) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCAt < 1:357769/76‑1 (MQ=255) aaTTTTGATTCATCGTGATGACCGGTTTATCCCCCCCCGGGCGGGGGGCAACCCCCACCGGGGGGG‑GAAAAccccc > 2:1257950/1‑75 (MQ=255) ttttGATTCATCGTGATGCCCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATaa < 1:1648334/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATaa < 1:334999/76‑1 (MQ=255) tttaTTCATCGTGATGCCCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAgc < 2:758039/73‑1 (MQ=255) ntGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGGAC‑ACCCTGAACGGGGGGG‑GAAAAACCCATAAgc > 1:1524013/2‑76 (MQ=37) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCt < 2:531342/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCt < 1:1685477/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTa < 2:692163/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTa < 1:1835531/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTACCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTa < 1:713550/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTaa < 1:286570/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTaa < 1:1598907/76‑1 (MQ=255) cATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAc < 1:1657300/76‑1 (MQ=255) aTCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACt < 2:1358707/76‑1 (MQ=255) aTCGTGAGGCCCGGTTTACCCCCGCGGGCGGGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACt < 1:1027154/76‑1 (MQ=255) tCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACtt < 1:1596483/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTaa < 1:1376167/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTaa < 1:1808651/76‑1 (MQ=255) aCCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTtg < 1:582957/76‑1 (MQ=255) ccGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTtgt < 1:1087756/76‑1 (MQ=255) cGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTtgtg < 2:104550/76‑1 (MQ=255) tttATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:397797/1‑76 (MQ=255) tttATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 2:244476/76‑1 (MQ=255) tttATCCCCGATGGCGCGGGGGAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:1886224/1‑76 (MQ=255) ttATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:1221705/76‑1 (MQ=255) ttACCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:603001/76‑1 (MQ=255) ttACCCCCGCGGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:1097121/76‑1 (MQ=255) ttACCCCCGCGGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:1197384/76‑1 (MQ=255) tacccccGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:619605/73‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1682805/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:1851766/1‑76 (MQ=255) tATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:1266257/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:122826/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 1:1755739/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:144167/76‑1 (MQ=255) tCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 2:1768380/76‑1 (MQ=255) tCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGGGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGGATTAc > 2:1255053/1‑76 (MQ=37) ccGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc < 1:1341172/76‑1 (MQ=255) cGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 2:321480/76‑1 (MQ=255) cGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt > 2:104706/1‑76 (MQ=255) cGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt > 2:1095431/1‑76 (MQ=255) gCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 2:1875462/76‑1 (MQ=255) gCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 2:2000726/76‑1 (MQ=255) gCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 1:256259/76‑1 (MQ=255) cgggCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa < 1:1219158/74‑1 (MQ=255) tGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat > 2:505691/1‑76 (MQ=255) gcgGGGAAC‑ACCCTGAACGGTGGGGAAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:1029814/76‑1 (MQ=255) ggggAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 1:1571095/1‑76 (MQ=255) gggAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:958550/76‑1 (MQ=255) ggAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 2:622940/76‑1 (MQ=255) gAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:1330880/76‑1 (MQ=255) ac‑acCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg > 2:661780/1‑76 (MQ=255) acCCTGAACGGTGGGG‑AAAAACCCCATGAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg > 2:312910/1‑76 (MQ=255) gAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:1580634/76‑1 (MQ=255) aaCGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:1468617/76‑1 (MQ=255) gTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 2:1509581/1‑76 (MQ=255) tGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 1:1434602/1‑76 (MQ=40) gg‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 2:570657/1‑76 (MQ=35) g‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 1:1478625/76‑1 (MQ=34) g‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 1:333980/76‑1 (MQ=34) g‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 2:1514189/76‑1 (MQ=34) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc < 1:934256/76‑1 (MQ=32) | AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAAC‑ACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772782‑2772923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |