| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 46 (0.860) | 34/144 | 0.6 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 41 (0.770) | 35/144 | 0.5 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
ATTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 | aTTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATa < 1:914104/76‑1 (MQ=255)aTTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATa < 2:1227737/76‑1 (MQ=255) tttGTTTCATCGTGATGCCCGGTTTAC‑‑CCCCGCGGGCGGGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 2:732307/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATTCCCCCCCGGGCGGGGGGCAAACCCAAAGGGGGGGGGAAAAACCCCaaa > 1:1051495/1‑74 (MQ=255) tttGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCCGGCGCGGGGGACACCCTGAACGGGGGGGGAAAAACCCCTAAg > 2:1084658/1‑76 (MQ=25) tGATTCAGCGTGAGGACCGGTTTAC‑‑CCCCGCGGGCGGGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgcg < 1:666800/76‑1 (MQ=255) aTTCATCGTGATGCCCGTTTTAC‑‑CCCCGCTGGCGGGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCt < 1:704256/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCt < 2:369952/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 2:1312544/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 1:819441/76‑1 (MQ=255) tccATCGTGATGCCCGGTTTAC‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 1:357686/74‑1 (MQ=38) aTCGTGATGACCGGTTTAT‑‑CCCCCCTGGCGGGGGGGACACCCCGAACGGGGGGGGAAAACCCCATACACGCTAACt > 2:1440735/1‑76 (MQ=255) tCGTGATGCCCGTTTTCC‑‑CCCCGCTGGCGGGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:820194/76‑1 (MQ=38) tCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:1592137/76‑1 (MQ=255) gatgaCCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAgg < 1:319969/76‑1 (MQ=255) tgaCCGGTTTAT‑‑CCCCGCCGGCGGGGGGGAGACCCTGAACGGCGGGGGGAAAACCCCTAAGCGCGTACTTTAgggg > 2:1308395/1‑75 (MQ=255) gaCCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:1483188/76‑1 (MQ=255) gaCCGGTTTAC‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:771436/76‑1 (MQ=255) tttAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATCAGCGCTAACTTAAGGGTTGTGGTa > 2:1169449/1‑76 (MQ=255) tttAC‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 1:407902/76‑1 (MQ=255) ttAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 2:248703/1‑76 (MQ=255) tAT‑‑CCCCGCTGGCGCGGGGGACACCCTGAACGGCGGGGAAAAACCCCCACAGCGCCAACTTAAGGGGTATGGGAtt > 2:439931/1‑76 (MQ=21) tAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:641640/76‑1 (MQ=255) tAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1754898/76‑1 (MQ=255) aT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 2:976023/1‑76 (MQ=255) t‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 2:800571/76‑1 (MQ=255) gCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 1:1585093/76‑1 (MQ=255) cgcgGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:467435/76‑1 (MQ=255) cgGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 1:226400/76‑1 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 2:316340/1‑76 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:1430646/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:503087/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:826342/76‑1 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:710666/76‑1 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:286787/76‑1 (MQ=255) cacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt < 1:535674/76‑1 (MQ=255) cacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt < 1:402390/76‑1 (MQ=255) cacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGt > 1:1016308/1‑76 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 2:720/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg > 1:622579/1‑76 (MQ=255) ccTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc > 1:1270394/1‑76 (MQ=255) tGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa > 1:1540619/1‑76 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 2:418226/76‑1 (MQ=255) aCGGTCGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:328115/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 1:939324/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:1308395/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 1:1239153/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 1:404643/76‑1 (MQ=255) ggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 1:608902/1‑76 (MQ=35) gAAAAACCCCATAAGCGCTAACTTATGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 1:182999/76‑1 (MQ=21) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa > 2:450445/1‑76 (MQ=31) | ATTTTGATTCATCGTGATGACCGGTTTAT‑‑CCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |