New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	1278472 =	56 (1.090)	4 (0.080)	4/142	5.5	6.9%	coding (366/1392 nt)	narK	nitrate/nitrite transporter
	?	REL606	1278491 =	55 (1.140)					coding (385/1392 nt)	narK	nitrate/nitrite transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGAAGTTCGCGCCAGCAAAGCCGCATAGCAGAGAGATGATGATGAAGACGCTATAAGGCGTGGAGGTATCCTGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1278549‑1278472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgCCTTATAGCGTCTTCATCATCATCTCTCTGCTATGCGGCTTTGCTGGCGCGAACTTCGCATCCAGTATGGCAAAC  >  REL606/1278491‑1278565                                                                                                                                                           GCGAAGTTCGCGCCAGCAAAGCCGCATAGCAGAGAGATGATGATGAAGACGCTATAAGGCGTGGAGGTATCCTGCA                                                                               >  1:104346/1‑76                                                   GCTATAAGGCGTGGAGGTATCCTGCACGCCTTATAGC                                                                    >  1:727500/1‑37                                                   GCTATAAGGCGTGGAGGTATCCTGCACGCCTTATAGC                                                                    <  2:727499/37‑1                                                    CTATAAGGCGTGGAGGTATCCTGCACGCCTTATAG                                                                     >  1:411853/1‑35                                                    CTATAAGGCGTGGAGGTATCCTGCACGCCTTATAG                                                                     <  2:411852/35‑1                                                                            ACGCCTTATAGCGTCTTCATCATCATCTCTCTGCTATGCGGCTTTGCTGGCGCGAACTTCGCATCCAGTATGGCAA    <  1:1311358/76‑1                                                                            ACGCCTTATAGCGTCTTCATCATCATCTCTCTGCTATGCGGCTTTGCTGGCGCGAACTTCGCATCCAGTATGGCAA    >  1:456547/1‑76                                                                            ACGCCTTATAGCGTCTTCATCATCATCTCTCTGCTATGCGGCTTTGCTGGCGCGAACTTCGCATCCAGTATGGCAA    <  1:525988/76‑1                                                                             CGCCTTATAGCGTCTTCATCATCATCTCTCTGCTATGCGGCTTTGCTGGCGCGAACTTCGCATCCAGTATGGCAAA   <  2:520097/76‑1                                                                              GCCTTATAGCGTCTTCATCATCGTCNCGCTGCTATGCGGCTTTGCTGNCGCCAACTTCGCATCCAGTATGGCAAAC  <  1:255782/76‑1                                                                                                                                                           GCGAAGTTCGCGCCAGCAAAGCCGCATAGCAGAGAGATGATGATGAAGACGCTATAAGGCGTGGAGGTATCCTGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1278549‑1278472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgCCTTATAGCGTCTTCATCATCATCTCTCTGCTATGCGGCTTTGCTGGCGCGAACTTCGCATCCAGTATGGCAAAC  >  REL606/1278491‑1278565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.