Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 3893614–3894994 | 3901930 | 6937–8317 | 15 [13] | [0] 65 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 3652533 | NA (NA) | 65 (1.300) | 40/146 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system |
TGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA > REL606/3901858‑3902003 | tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGt < 1:924587‑M2/3‑1 (MQ=255) gactccaattgaatatcggagtcatacctatatgcctcgtgtttaactgtccagctctatgtggtcagtacaGGtt > 1:81662‑M2/73‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt > 2:1648623‑M2/73‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt > 2:226540‑M2/73‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt < 1:1003896‑M2/4‑1 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt > 1:1558179‑M2/73‑76 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGtt < 2:561704‑M2/4‑1 (MQ=255) gactccaattgaagctcggaatcagacctagatggctcgtgtttaactgtccaactttttggggtcagtacaGGtt < 2:16282‑M2/4‑1 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttgcggtcagtacaGGTTg > 1:1425574‑M2/72‑76 (MQ=255) ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGccc > 2:1219941‑M2/69‑76 (MQ=255) attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAgg < 2:575185‑M2/11‑1 (MQ=255) ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGt > 1:187870‑M2/65‑76 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAc < 1:1243162‑M2/15‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAc < 1:1243168‑M2/15‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAc < 1:1248336‑M2/15‑1 (MQ=255) atatcggaatcagacctatatgcctngtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAcc < 2:115506‑M2/16‑1 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAcc > 1:889862‑M2/61‑76 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGAcc < 1:1621304‑M2/16‑1 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCa < 1:1176829‑M2/17‑1 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcg < 2:1240872‑M2/22‑1 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcg < 1:287931‑M2/22‑1 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgc > 2:1028532‑M2/54‑76 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgccg > 2:562384‑M2/52‑76 (MQ=255) caggcctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCAcgccgc > 1:128485‑M2/51‑76 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttgggggcagtacaGGGTGCCCAGGGGACCAGCACgccgcc > 2:802563‑M2/50‑76 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCa < 1:1278722‑M2/28‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCgccacag < 2:721406‑M2/31‑4 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCgccacag < 2:569610‑M2/31‑4 (MQ=255) tatatgcctcgtgtgtaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACACCGCCAAGaa < 1:133173‑M2/32‑1 (MQ=255) atatgcctcgtgtttaantgtccaactttttggggtcagtacaGGTTGCCCACGTGACCAGCAGGCAGCCAAGAAc > 1:217376‑M2/44‑76 (MQ=255) atatgcctcgtgtttaactgtccatcttngtggggtcagcacaGGTTGTCNAGATGACCAGCACGCCGCCAAGAAc > 1:244476‑M2/44‑76 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc < 2:1183491‑M2/33‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc > 1:1216827‑M2/44‑76 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc < 1:1175165‑M2/33‑1 (MQ=255) atatgcctcgtgnttnactgtccaactttttgggntcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAc < 1:1404369‑M2/33‑1 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTTACGAGCACGCCGCCAAGAACGGGGCCTa > 1:258570‑M2/36‑76 (MQ=255) gtttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaaa > 1:438477‑M2/33‑76 (MQ=255) tttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt > 2:1594810‑M2/32‑76 (MQ=255) tttaactgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCCAAAAt < 1:107118‑M2/45‑1 (MQ=255) actgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGc < 1:924164‑M2/49‑1 (MQ=255) ctgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcc < 2:824509‑M2/50‑1 (MQ=255) ctgtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcc < 2:1579034‑M2/50‑1 (MQ=255) tgtncaactttttggggtcagtacaGGTTGCCCAGGTGACCAACACGCCGCCAAGAACGGGGCCTAAAATTGGccc > 1:1547024‑M2/26‑76 (MQ=255) gtccaactttttggggtcagtacaGNTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc < 2:114245‑M2/52‑1 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc > 2:1411704‑M2/25‑76 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc > 2:1530423‑M2/25‑76 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc > 2:1158112‑M2/25‑76 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc < 2:395316‑M2/52‑1 (MQ=255) gtccaactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAACTGGcccc > 2:947114‑M2/25‑76 (MQ=255) tccaactttttnggngcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGAAGCCTAAATTTTGCCcca < 2:257594‑M2/53‑1 (MQ=255) tccaactttttcgggtcagtacaGGGTGCCCAGGTGACCAGCACGCCGCCGAGAACGGCGACTCAAATTGGCCcca < 1:19838‑M2/53‑1 (MQ=255) tccaacttnttgtggtcagtacaGATTTCCCAGTGGACCAGCATGCCGCCAAGAACGGGGCCTAAAATTGGCCcca < 2:288557‑M2/53‑1 (MQ=255) caactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacc < 2:766035‑M2/55‑1 (MQ=255) aactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacca < 2:1077752‑M2/56‑1 (MQ=255) aactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacca < 2:734936‑M2/56‑1 (MQ=255) aactttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacca < 2:787407‑M2/56‑1 (MQ=255) ttttggggtcagtacaGGTTGCCCAGGTGACCAGCACGNCGCCAAGACCGGGGCCTAAAATTGGCCCCACCAGAcc < 1:1663534‑M2/60‑1 (MQ=255) gtttgcgatcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAcc < 2:60986‑M2/60‑1 (MQ=255) tggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCgg > 2:341711‑M2/14‑76 (MQ=255) ggggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGc < 2:878343‑M2/64‑1 (MQ=255) ggtcagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAt < 2:1288609‑M2/66‑1 (MQ=255) gtcagtacaGGGTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATg < 2:856021‑M2/67‑1 (MQ=255) cagtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGc > 1:1299689‑M2/8‑76 (MQ=255) agtacaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg < 2:462780‑M2/70‑1 (MQ=255) acaGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa > 1:1333239‑M2/4‑76 (MQ=255) | TGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA > REL606/3901858‑3902003 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |