| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2037366 | 67 (1.080) | 7 (0.120) | 5/136 | 6.1 | 10.7% | coding (765/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037865 | 56 (1.000) | coding (266/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2037286‑2037366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttttTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTGTTGCTGGTAATAATGAGCG < REL606/2037865‑2037793 TCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTAT < 1:541538/76‑1TCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTAT > 2:567390/1‑76 CATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATT < 2:1055386/76‑1 ATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTT > 1:1856659/1‑76 CCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTTCAAAAAAAAAATAGATTCTCCATTTTTTTTTTTATTT > 1:446440/1‑76 ATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTTAATTTGTTTAGAATTATTATATATAACATA > 2:1913372/1‑76 AAAATCAGTAGATTCTCCATTATTTTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCT > 2:1196965/1‑76 AAAATCAGTAGATTCTCCATTATTTTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCT > 2:1294466/1‑76 AAAATCAGTAGATTCTCCATTATTTTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCT > 2:1294483/1‑76 AGTAGATTCTCCATTATTTTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTG > 2:338737/1‑76 TCCATTATTTTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTGTTGCTGGTA > 2:825401/1‑76 TTTTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTGTTGCTGGTAATAATGA < 1:1331898/76‑1 TTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTGTTGCTGGTAATAATGAGC < 1:1525779/76‑1 TTTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTGTTGCTGGTAATAATGAGC < 2:1308960/76‑1 TTTTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTGTTGCTGGTAATAATGAGCG > 2:70373/1‑76 TCATCAGCACTCCCTAATTTTTTAGCAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2037286‑2037366‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttttTAATTTGTTTAGAATTATTATATATAACATACGTATTTAATACAGGCTTATTTGTTGCTGGTAATAATGAGCG < REL606/2037865‑2037793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |