| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040964 = | 48 (0.820) | 8 (0.150) | 6/140 | 6.0 | 12.7% | coding (420/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041449 = | 65 (1.190) | coding (1372/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAAAATAGAACAGGCTATTACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041043‑2040964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaaTTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCA > REL606/2041449‑2041522 GAAAAATAGAACAGGCTATTACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGT < 1:1053966/76‑1 AAAATAGAACAGGCTATTACACCAAAAACTTCAGCAATTTTACATGTCCATTGCTACTCAACACCCTGTGAAGTCG > 1:880486/1‑76 AAATAGAACAGGCTATTACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGA > 1:920421/1‑76 GAACAGGCTATTACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAATTAG < 2:51660/76‑1 ATTACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAATTAGTGTGATGTA < 2:1026234/76‑1 ATTACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAATTAGTGTGATGTA < 2:1026246/76‑1 TACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAATTAGTGTGATGTATA < 2:198014/76‑1 ACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAATTAGTGTGATGTATAT < 2:40264/76‑1 ACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAATTAGTGTGATGTATAT < 2:40284/76‑1 CAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAATTAGTGTGATGTATATAATGGCATTTAATAAA < 2:1657979/76‑1 CACCCTGTGAAGTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGT < 2:1427262/76‑1 CGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTT > 2:347916/1‑76 GAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTC < 1:844844/76‑1 GAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTC < 1:844828/76‑1 AATTAGTGTGATGTTTATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCA > 1:1483316/1‑76 AATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCA < 2:1436658/76‑1 AATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCA < 1:1049753/76‑1 GAAAAATAGAACAGGCTATTACACCAAAAACTTCAGCAATTTTACCTGTCCATTGCTACTCAACACCCTGTGAAGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041043‑2040964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaaTTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCA > REL606/2041449‑2041522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |