| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3022392 = | 57 (0.970) | 9 (0.170) | 5/136 | 6.3 | 10.6% | coding (293/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022865 = | 100 (1.880) | intergenic (‑181/+393) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCCTTTATCAAGGGAAAGATTGTATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3022473‑3022392‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcttatTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAATAT > REL606/3022865‑3022938 TATCCTTTATCAAGGGAAAGATTGTATTTTATTTGTTTAATGCACAGTCCAGTTGTCGTGTCGTAGCCAATAGAGA > 2:1019202/1‑76 ATCCTTTATCAAGGGAAAGATTGTATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGAT < 1:224978/76‑1 AGGGAAAGATTGTATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTATTCTTAA < 2:1105290/76‑1 AGGGAAAGATTGTATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTATTCTTAA < 2:1105268/76‑1 AGGGAAAGATGGTATTTTATTTGTTTAATGCACAGTCCAATTGTGGTGTCGTAGCCAATAGAGATCTTATTCTTAA < 2:1105279/76‑1 TTGTATTTTATTTTTTTAATGCACAGTCCAATTGTCGTGCCGTAGCCAATAGAGATCTTATTCTTAATAAAAAATG < 2:1046236/76‑1 TTGTATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTATTCTTAATAAAAAATG < 2:1046221/76‑1 TATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTATTCTTAATAAAAAATGTAG < 2:219789/76‑1 TATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTATTCTTAATAAAAAATGTAG < 2:1622074/76‑1 TATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTATTCTTAATAAAAAATGTAGTAAAA < 2:1395590/76‑1 ATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAA < 2:86225/76‑1 TCTTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAA > 1:98722/1‑76 TCTTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAA < 2:1384076/76‑1 CTTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAA > 1:1347768/1‑76 CTTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAA > 1:1024722/1‑76 CTTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAA > 2:317018/1‑76 CTTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAA > 1:1024720/1‑76 TTATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAAT < 2:622418/76‑1 TATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAATA < 1:1798976/76‑1 TATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAATA > 2:321849/1‑76 ATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAATAT < 1:990054/76‑1 ATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAATAT > 1:256946/1‑76 ATTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAATAT < 1:1618563/76‑1 TATCCTTTATCAAGGGAAAGATTGTATTTTATTTGTTTAATGCACAGTCCAATTGTCGTGTCGTAGCCAATAGAGATCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3022473‑3022392‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcttatTCTTAATAAAAAATGTAGTAAAATCTTGTAAAAAATAAATTTATAATGCTTTATGGAAAACCTAAATGAAATAT > REL606/3022865‑3022938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |