Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	3697036–3697074	3698227–3697080	7–1192	20 [19]	[18] 21	rhsA	rhsA element core protein RshA

TGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTC  >  REL606/3698217‑3698303            |                                                                            tgtgGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGc             >  2:950900/1‑76 (MQ=32) tgtgGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGc             <  2:481778/76‑1 (MQ=32)  gtggtgACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGcc            <  2:988871/76‑1 (MQ=34)   tggtgACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCa           <  1:631654/76‑1 (MQ=34)    ggtgACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAg          <  1:326840/76‑1 (MQ=34)     gtgACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGt         >  2:1331547/1‑76 (MQ=34)     gtgACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGt         >  1:3204/1‑76 (MQ=34)      tgACGGTCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGtt        <  2:922454/76‑1 (MQ=21)      tgACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGtt        <  1:916572/76‑1 (MQ=34)       gACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTa       <  1:459444/76‑1 (MQ=34)        aCGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTaa      <  1:504269/76‑1 (MQ=34)        aCGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTaa      <  2:1089337/76‑1 (MQ=34)        aCGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTaa      <  2:1554705/76‑1 (MQ=34)        aCGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTaa      <  2:470253/76‑1 (MQ=34)         cGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAAc     >  2:326338/1‑76 (MQ=34)          gggCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACg    <  2:1545362/76‑1 (MQ=34)          gggCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACg    <  2:717010/76‑1 (MQ=34)           ggCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTAGTATAACCACCACAGCCAGCTAACgc   >  1:304552/1‑75 (MQ=255)            gCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTc  >  1:495654/1‑76 (MQ=34)            gCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTc  <  2:817634/76‑1 (MQ=34)            gCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTc  >  1:356485/1‑76 (MQ=34)            |                                                                            TGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTC  >  REL606/3698217‑3698303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑