New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2037392	34 (0.510)	5 (0.080)	5/134	7.6	14.8%	coding (739/1176 nt)	wzy	O antigen polymerase (Wzy)
	?	REL606	= 2037686	27 (0.450)					coding (445/1176 nt)	wzy	O antigen polymerase (Wzy)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2037313‑2037392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattatcATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTAT  <  REL606/2037686‑2037613                                                                                                                                                            ATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATA                                                                                 <  2:1560110/75‑1  TTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATAT                                                                                >  2:640714/1‑75                                                        AATTCTGAAGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTT                          >  2:1766432/1‑75                                                          TTCTGAAGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCA                        >  2:203928/1‑75                                                           TCTGAAGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCAT                       >  2:1661409/1‑75                                                               AAGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTG                   >  2:1590711/1‑75                                                                AGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGA                  >  2:1726873/1‑75                                                                               TCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTA   <  1:11981/75‑1                                                                               TCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTA   >  1:236510/1‑75                                                                               TCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTA   <  1:252422/75‑1                                                                               TCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTA   <  2:1595755/75‑1                                                                                CATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTAT  >  2:724579/1‑75                                                                                                                                                            ATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2037313‑2037392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattatcATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTAT  <  REL606/2037686‑2037613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.