New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2039188 = | 24 (0.420) | 6 (0.110) | 4/140 | 6.9 | 15.1% | coding (507/747 nt) | wbbA | putative glycosyltransferase WbbA |
? | REL606 | 2039561 = | 45 (0.840) | coding (134/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CATCCAGATAAATATAGTGAATATTGTGAACATCTTGATTCATTAAAAAATAAAAACAAAAAAACTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039256‑2039188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctattTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACTCAGG > REL606/2039561‑2039634 CATCCAGATAAATATAGTGAATATTGTGAACATCTTGATTCATTAAAAAATAAAAACAAAAAAACTATTTGGTCTT < 2:690874/76‑1 TATAGTGAATATTGTGAACATCTTGATTCATTAAAAAATAAAA‑‑GTAAATGCTATTTGGTCTTTATATTTAGATTCT < 2:1553691/76‑1 TATAGTGAATATTGTGAACATCTTGATTCATTAAAAAATAAAA‑‑GTAAATGCTATTTGGTCTTTATATTTAGATTCT < 2:1553711/76‑1 AGTGAATATTGTGAACATCTTGATTCATTAAAAAATAAAAACAAAAAAACTATTTGGTCTTTATATTTAGATTCTT < 2:38576/76‑1 AGTGAATATTATGAACATCTTGAGTCATTAAAAAATAAAAACAAAAAAACTATCTGGTCTTTATATTTAGATTCTT < 2:38566/76‑1 ATTGTGAACATCTTGATTCATTAAAAAATAAAAACAAAAAAACTATTTGGTCTTTATATTTAGATTCTTTTATTGT < 2:1346027/76‑1 TTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACTCAGG > 1:113820/1‑76 CATCCAGATAAATATAGTGAATATTGTGAACATCTTGATTCATTAAAAAATAAAAACAAAAAAACTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039256‑2039188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctattTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTTCATGACTAAACCACTCAGG > REL606/2039561‑2039634 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |